Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi529g00001 GAGTTAGTAGTTCCAAGAAGAGACATATGGAATGCTTCTTCCACTGGGTTTAGTGAGTTATTGCTTAGTGGTTGGAGCTTTGATTCTATTGTGGAGAACCCAGCTTTGGCTACTTCAAACTCCTCATTTGCTTCATTTTCAACACCATTAGACCATAGATTTGAGTGTCCTTACAACAGTGCAGCAACATACCATTTTTCTGATGGGTTCACAATGCCAGAGCTTGACTCATCACATACAAGGAATGATGACCCAGCACCCCTTCCAAAGCAGGAACATAACCCATCAGTGGAGAATGAAGAGATTGGTTTTCTAGGCAGTGGTGACAAGAGCTTGGAGGAAACAAAGTGTGGCTGCAAAATTGAGGAGCAGAGTACTGAGATTCCAGTCTTCAACATGGGGGTGTGTGATGGAGAGAAAAAATCAAAGTCCAAGAAGCTAGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAATGACCGTATTTCTATGCTGAGGTCAATAGTCCCCAAGATCAGCAAGATGGACAGGACCTCTATTCTTGGAGATACCATAGATTACATGAAAGAGCTTTTGGAAAGGATTGGTAAGTTGCATGAAGGAGAAGGGGAAGAGGAGACAAGTCAGATAAATCTCTTGGACATTTCCAAGGAACTCAAGAAGCCAAATGAAGTAATAGTAAGAAATTCCCCCAAGTTTAATGTTGAGAGGAGAGACCAGGACATGAGGATCAGCATCTGCTGTGCCACATGGCCAGGATTGTTACTATCAACAATAAATACACTAGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTATAAGTAGTTTCAATGACTTTTCAATGGAAGTATCATGTTCAGAGGTAGCTGAACAAAGAAACTGCATTAGCTCTGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGGTTTAGTGGGATATGTCTCTAG 972 0.4198 ELVVPRRDIWNASSTGFSELLLSGWSFDSIVENPALATSNSSFASFSTPLDHRFECPYNSAATYHFSDGFTMPELDSSHTRNDDPAPLPKQEHNPSVENEEIGFLGSGDKSLEETKCGCKIEEQSTEIPVFNMGVCDGEKKSKSKKLEGQPSKNLMAERRRRKRLNDRISMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLHEGEGEEETSQINLLDISKELKKPNEVIVRNSPKFNVERRDQDMRISICCATWPGLLLSTINTLEALGLEIQQCVISSFNDFSMEVSCSEVAEQRNCISSEEIKQALFRNAGFSGICL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi529g00001 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Sebi529g00001 323 Gene3D - 137 199 IPR036638 GO:0046983
Sebi529g00001 323 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 69 318 - -
Sebi529g00001 323 SMART finulus 155 204 IPR011598 GO:0046983
Sebi529g00001 323 MobiDBLite consensus disorder prediction 75 109 - -
Sebi529g00001 323 Pfam Helix-loop-helix DNA-binding domain 155 198 IPR011598 GO:0046983
Sebi529g00001 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 209 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi529g00001 Sebi-Chr529 132657 134303 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi529g00001 133 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 61.458 1.40e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi529g00001 HLH 4.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi529g00001 - - gmx:100806571 478.789