Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi528g00028 ATGCCTTTTAAGGGACTGTGGCTCTGCGCCACAGACAACAATGACTTAGAGAAGAAAGCGACTAAGGATCTTCAAGTTAAAGGCAAGTTCGTCAACCCTGGGAAACAAATTATAGGATCCGTCCCTAGAGTTGAAGTCGGTGATGAATTCCTATACTGGAGGGAGTTTAACGTTGTTGGCCTTCATCGCCAAATCACCCGTGGCATATATTATGTGAATGTTAATGGCATGTTGCTCGCTACCAGCATTGTTTCGGGAGGGGTTTATGATGATGATGTAGAGGATACAAATGAGTTAGTTTATATGGGGGAGGGAGGGAATGTGATAAAGAGAGAAAGGAAACCTAAAGATCAAAAACTTAACGGGGTTGATAAGTATTGGCATGAGAAATGGTTACATGGTAAGTTGGTTTACAAGTTCAAATTTAAAAGAATGCCTGATCAAGTAGAGGTTCCTTGGAATGAGCTAAAGAAATCTCAAAGCCTAGAAGGTAGGGAGGGTTTATGTGTCAATGACATTTCTTATGGGAAAGAGTTAATTCCTATATATGCCATTAATACTGTGGATTATGAAGGGCCACCTATGTTTGAATACATGACTCGCATGGTGTATCCTAATTTGTGCAACCCCATTCCTTATGTGGGGTGTGATTGTGTCGATGGATCCTCTGACTCGATGAAATGTTCTTGTGTAGAGAGGAATATGGGTAAAATCCCATTCAATGGGAAAAAGGCTACTGTGGTAGGAAGGCCGAATTGTATAGTCTATGAGTGTGGTCCTTCATATAAGTGCCCTCCAACATGCCAAAACAAGATTAGCCAACATGGGATTCAATTTCGGTTTGAAATATTTAAGACCAAGACAAAGGGATGGGGTGTGAGATCCCTTAATAGCATTCCTTCTGGAAGTTTGATATGTGAATATACAGGTGAGCTTATTGAATTTGAGGAAGCTAAAAATAGGGCTAATAATGATGAGTATATTTTTGATATTGGGAATAACTATAGTGATGATACTCCCTGGGAAGAGCTTTCGACGATTATCCCTGACATAGGATTGAGTTCTTCTTCCCAAGTAATTAAGCATGGTAGCTTCACAATTGATGCTGCACACCGTGGTAATTTTGGGAGGTTTATTAACCACAACTGCTCCCCTAATCTTTTTGCTCAAATTGTCCTTTATAATCACGATGACAACAAGATTCTCCACATAATGTTGTTTACGGATGACAACATTCCTCGCATGCAAGAGTTGACTTACAATTACAATTACAAGATAGATCAAGTTTGTGGTGCTGATGGCAATATAAGGAAGAAGAATTGCTATTGCGGTGCTCTGGAGTGTACTGGCAGGATGTATTAA 1362 0.3994 MPFKGLWLCATDNNDLEKKATKDLQVKGKFVNPGKQIIGSVPRVEVGDEFLYWREFNVVGLHRQITRGIYYVNVNGMLLATSIVSGGVYDDDVEDTNELVYMGEGGNVIKRERKPKDQKLNGVDKYWHEKWLHGKLVYKFKFKRMPDQVEVPWNELKKSQSLEGREGLCVNDISYGKELIPIYAINTVDYEGPPMFEYMTRMVYPNLCNPIPYVGCDCVDGSSDSMKCSCVERNMGKIPFNGKKATVVGRPNCIVYECGPSYKCPPTCQNKISQHGIQFRFEIFKTKTKGWGVRSLNSIPSGSLICEYTGELIEFEEAKNRANNDEYIFDIGNNYSDDTPWEELSTIIPDIGLSSSSQVIKHGSFTIDAAHRGNFGRFINHNCSPNLFAQIVLYNHDDNKILHIMLFTDDNIPRMQELTYNYNYKIDQVCGADGNIRKKNCYCGALECTGRMY 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi528g00028 453 ProSiteProfiles SET domain profile. 279 423 IPR001214 GO:0005515
Sebi528g00028 453 SMART preset_2 170 265 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi528g00028 453 Pfam SAD/SRA domain 38 121 IPR003105 -
Sebi528g00028 453 Gene3D SET domain 162 453 IPR046341 -
Sebi528g00028 453 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 24 445 - -
Sebi528g00028 453 ProSiteProfiles Post-SET domain profile. 437 453 IPR003616 -
Sebi528g00028 453 ProSiteProfiles Pre-SET domain profile. 214 276 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi528g00028 453 SUPERFAMILY PUA domain-like 29 159 IPR015947 -
Sebi528g00028 453 SMART set_7 279 429 IPR001214 GO:0005515
Sebi528g00028 453 SUPERFAMILY SET domain 166 429 IPR046341 -
Sebi528g00028 453 Gene3D - 23 122 IPR036987 -
Sebi528g00028 453 ProSiteProfiles YDG domain profile. 39 202 IPR003105 -
Sebi528g00028 453 Pfam SET domain 290 423 IPR001214 GO:0005515
Sebi528g00028 453 SMART G9a_1 34 148 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi528g00028 Sebi-Chr528 508256 510710 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi528g00028 26 453 EF-hand Containing Proteins AT5G13960 33.673 4.32e-83 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi528g00028 SET 3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi528g00028 K11420 - lang:109363359 573.548