Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi526g00038 ATGGCTCAACAAGAAAACTACAAACGGGTGGCGCCTCACCCTCCGGAGTTACAGAAAGCTAAGAAGCAAGTGGTTCTCGGCGATGTCACCAATTTTGGCATAACCAAGAAGAAGACGGAGATAACGCACAAGTGCAATCAATCATCCACTCCCTCTTCCATCTACAGCCATCTACATGCCTTGGAGATGGAGGCGAATAGGAGGCCATTGGCCAATTACACGGAGACAGTTCAGAGCGAAGTTTCAAAAGAGATGCGGAAAATTCTGGTGGATTGGATGGTTGAGGTTGCAGAGGATTACAAGCTTGTTTCTGATACCATTTATCTTGCTGTTTCTTGCATTGATCGCTTCCTATCTACCCGTCCTATTAGCAGGGACCACCTCCAGCTTCTTGGTGTTTCTTGCATGTTTATTGCCTCGAAATATATAGAGATCACTCCTCCACCTGCCGAAGACTTCTGCTACATGACAGATAACGCTTACACCCTCTCAGAGGCAAGAAACAATACCATTACCATTACCATACCGCTTAATTGCTTTTCTAATTCTGTTTCTATTACTTTAACTAACCTCACAATTCCTACTGCTACTGGATGCCAGAATTTTTATCAAAGATGCAAAGCAAGACTTCCAGACTATAAGTGCATCAAGTTCTTACCATCAGTGGCTGCAGCATCGGCTTTATTTCTATCCAGATTTATAATCGAACCAGACAAGCATCCATGGAACCTAGAGTTACAATGTCAAACGGGTTATAAGCCATGCGACCTCAAGGAATGTGTCCTTGCCATACATGCGGAGCACTCGAATATCACTGACAGCCCTTTACAAGGTGTACGAGAAAAATACTTGCACCACAAGAAAAAAGTCAAGAAGAGTAGAGAAATGGAGGTACCTTATGAAGGACCCATAGGGAATGATTATAGGTGCGTTGAAAGAGGTCATGAAGAGTGGTGGAATCAGCAGGATCAACATCACGATCATCCTATAACGCGTGAAACTATAGCTTGCTCCCTTCAATTTTTGCCGCTTCGTTTGAATGCCTTCATACGTAGAAGATCTTGCTGGATACTCTTCCCTCGTTCTGAGAGTACAATGAGTTTGGACTCCTTTCGCTCCGGAAACTCCTCCTCAGCCCCTAATTCCAAACGAGGTTTCTCGTTCTCTAATTCAGCATCTTCTAACCGATCCAATGATAACTCTAACAGTGGTAATAATAAGAAGAAGAAGACGACGATGACGACAGCCACCAACCAGAAAACCCTAGGCGTCGCCTGGGGCTCAAATTCTCTCTCCTCCTCCTCCCGAAAATCCACCTTCTCCGATTTCGGCAGTTACATGACTGTGAAGAATCGAAAGCTACATGACCAGTTTGACGCTGAAGCTTCGACGTCTTTGTTTAGTCGCTCTAGTTCTGGGAAGCCTATATTCAATGGAGTTTCAATTTTTGTTGATGGCTTCACGGTTCCTTCTAGCCAGGAACTGCGGGGCTACATGTTAAAGTATGGTGGAAGATTTGAGAATTATTTCTCAAGACATCGCGTAACACATATCATCTGCAGTAATCTACCTGACAATAAAGTTAAGAACCTGAGAGCCTTCAGCGCAGGGCTGCCAGTGGTGAAACCCACTTGGATTTTAGATTCTGTTGCAGCTAATAGACTCTTGAGCTGGGTGCCCTATCAACTTGACCAGCTTGCTAGTAACCAACCTAAGCTCTCAGCCTTCTTCTCATTGAAAAGTAGCAAAATGTCTGAAGATGCTTTTACAAATGCTCTTTCTCAAGCAGAGTCAGTGTCGGACATTGAAGATTCATCTATGAGGGTTAACCAATCAGAGGATAGACACTCATCCAAAGTTGGGGAGATGGTTGAACTTAGCAGGGAAATCCGTATTGACTCTGATGATATTGCCCCTGAAAATACTAATGCAATTATGATGGAAGAGACGGCTAGTGTTAGAGTCAAATGTGATAAAGAAGAGCTTCAAGGAGGAAGCAATGCTGCTACTAAAGACAAGAGAAATGTCCAAGGTGAAGTTGAACCTAATCATCAAGAACCTTCTATATCAGTTAGTAGCCCCTGCTCAGATGACCAGAATGTAAGAGAATTACCAAGTTCTGCAGCCACTCAGCCTGCTAAACAGTGTCATTCAACTCTTGCAGATCCTAATTTTGTGGAAAATTATTTCAAGGTAGTGAAGTTCAAAGAAGTTTGCATTTTCATATTGCTTGAGCTCACGGCTACACTTTATAGGAACATGGAGAAATCGTCATTATTCATGTTGACATGGATTGTTTTTTTTGTCTCAGTGGTTATCAGGAACCATCCTGAATTGTTCGACAAGCCTGTAGCTGTATGTCACTCAAGTAATTCAAAGGGAACTGCTGAGATTTCCTCTGCAAACTACCCAGCTCGTAGCTATGGTATTAAAGCTGGTATATTTGTTCGAGATGCCAAGGCTCTTTGTCCCCACCTTATTATCTTCCCATACAACTTTGAAGCTTACGAGGAAGTAGCTGATCAGTTTTATAGTATATTGCATCGAAGTTGCAACAAAGTGCAGGCTGTAAGCTGTGATGAAGCATTTTTAGATGTCACACATTCAGATGTCAAAGACCCTGAACTTTTAGCTTCATCAATTAGAGAAGAGATCTATAAGACCACTGGATGTACGGCCAGTGCTGGTATAGCTGGAAATATGCTTATGGCTCGTATTGCTACAAGAACTGCAAAACCAAATGGTCAATATCACATAACTCCAGAAAGGGTTGAAGATCATTTATGTCAACTCCCAATTAATGCACTTCCTGGAGTAGGGCATGTTTTGCAGGAAAAATTGAAGAAGCGGAATATACATACATGTGGACAATTGCAGATGATTTCCAAGGCTTCACTGCAGAAGGACTATGGGATGAAAACGGGAGATATGCTATGGAACTATAGCAGAGGAATTGATAACCGGTTGGTTGGGGTCTTTCAGGACAATGTTATCTACACTTCTGCAGGAAAATTCAGATATCAGCTTTCTGTTTTAGCTGATGTCAAGGAGATTCGAGGTATTGGCTTGCAAGTTTCAAGACTTGAAAATGCAGAGTCTTCTAAGCAAGGTGCAGAAAAGTATACATTGAAATCCTGGGTCACTTCAGGATCTACAAGTATGGAAAAACAGAAATATCCTATGGGTCATGACAAGCAGAATATGGATGGCATTTCCAGTCCTGAATGTAGAGATTCACAAGGGTCTTCAGTTCAAATAGACAAAAAAATACAAAATAACCAAGCTAGTTCTGACCCAAATACAACACCACCTCCTTTGTGTCACCTTGATGTAGAAGTTATACAGAATCTTCCCCCAGAAGTATTTTCAGAATTAAATGAAATTTATGGAGGGAAGTTAGTTGATTATATTGCTAAAGGGAAAGGCACGAGTGAGAGTTCTTGCTCTTTACAGAACTCATTTTTGGAGCAAGAAGCAATAGACAAGGAAGAGGAACTTTTGTATCTTGAGCCGATTCCTCGAAAAGAGCCATTATCAGAAACTGAGGCAATGCAACATGAAGTGGAGGGAGGTGAAGCAGTTCAAGGCTCAGGGTGTGAACCCCCTTTCAAGGTTACTCACAATTCGAGTTTTGAAAAAAATGATTTATTGCCTTCTTCTTTAAGTCAAGTTGATGGTTCAGTGTTACGACAATTGCCTGAGGATTTGAAAGCTGTCATTGTTCAGCAGCTTCCTGCACACAGGAAGCAAGAGATTTGCTCCAATGTTGCGGTGGTTCCTCCTAGTGAGGACCATCAGGTGTCATTCAGTCTCAAAGCTTCTGAGAACCCTGGATCAAGTGATCATGTTCTGAATGTCAGTCTTTGGGCTGGGATTCCACCAAAATGGGTTGAAACATTTACAGCCAGCAGTTGCTTAATATTAAAAAAACTTGCAGAAATGTATTATAAATCTGGGTTGACTAGTACATTATCTTCACTTTTGCACCAAATTATATCTGAATTTCATCAGCTAAACCTAGTTCATCATATTTCTGATGAAACTGTTAACATCATGTGTGAGCTACTGAAGCAGTATATCAAACTGAAGATAGGAAGTGATATTGAAGAGATTTATATTTGTTTTCGGCTCTTAAAAAGGTTTGCAGCAAAGTCACCATTTTTCCTGCAAGTGTATAATACTGTATTTCCATACCTTCAGTTACGTTTGGACATGGACAGGGTTGGTCACGGTGAGATGGAAGGACTGCAACTCAGACTTTCAGAAGGCAGAAGATCAATTAATTTTCTGACGTCTGGGGACATCCATTTTTCAGTCCAATTAGACGTAACTTGTGGGCAACCACTGGGCGTAAACGCCAAATCTGAGACTCCTTGGAAGTGTCCGAATCACGGTGAAGGGAAGAAATTTGACCCAAATCCCAAGAGCAGCTGA 4434 0.4179 MAQQENYKRVAPHPPELQKAKKQVVLGDVTNFGITKKKTEITHKCNQSSTPSSIYSHLHALEMEANRRPLANYTETVQSEVSKEMRKILVDWMVEVAEDYKLVSDTIYLAVSCIDRFLSTRPISRDHLQLLGVSCMFIASKYIEITPPPAEDFCYMTDNAYTLSEARNNTITITIPLNCFSNSVSITLTNLTIPTATGCQNFYQRCKARLPDYKCIKFLPSVAAASALFLSRFIIEPDKHPWNLELQCQTGYKPCDLKECVLAIHAEHSNITDSPLQGVREKYLHHKKKVKKSREMEVPYEGPIGNDYRCVERGHEEWWNQQDQHHDHPITRETIACSLQFLPLRLNAFIRRRSCWILFPRSESTMSLDSFRSGNSSSAPNSKRGFSFSNSASSNRSNDNSNSGNNKKKKTTMTTATNQKTLGVAWGSNSLSSSSRKSTFSDFGSYMTVKNRKLHDQFDAEASTSLFSRSSSGKPIFNGVSIFVDGFTVPSSQELRGYMLKYGGRFENYFSRHRVTHIICSNLPDNKVKNLRAFSAGLPVVKPTWILDSVAANRLLSWVPYQLDQLASNQPKLSAFFSLKSSKMSEDAFTNALSQAESVSDIEDSSMRVNQSEDRHSSKVGEMVELSREIRIDSDDIAPENTNAIMMEETASVRVKCDKEELQGGSNAATKDKRNVQGEVEPNHQEPSISVSSPCSDDQNVRELPSSAATQPAKQCHSTLADPNFVENYFKVVKFKEVCIFILLELTATLYRNMEKSSLFMLTWIVFFVSVVIRNHPELFDKPVAVCHSSNSKGTAEISSANYPARSYGIKAGIFVRDAKALCPHLIIFPYNFEAYEEVADQFYSILHRSCNKVQAVSCDEAFLDVTHSDVKDPELLASSIREEIYKTTGCTASAGIAGNMLMARIATRTAKPNGQYHITPERVEDHLCQLPINALPGVGHVLQEKLKKRNIHTCGQLQMISKASLQKDYGMKTGDMLWNYSRGIDNRLVGVFQDNVIYTSAGKFRYQLSVLADVKEIRGIGLQVSRLENAESSKQGAEKYTLKSWVTSGSTSMEKQKYPMGHDKQNMDGISSPECRDSQGSSVQIDKKIQNNQASSDPNTTPPPLCHLDVEVIQNLPPEVFSELNEIYGGKLVDYIAKGKGTSESSCSLQNSFLEQEAIDKEEELLYLEPIPRKEPLSETEAMQHEVEGGEAVQGSGCEPPFKVTHNSSFEKNDLLPSSLSQVDGSVLRQLPEDLKAVIVQQLPAHRKQEICSNVAVVPPSEDHQVSFSLKASENPGSSDHVLNVSLWAGIPPKWVETFTASSCLILKKLAEMYYKSGLTSTLSSLLHQIISEFHQLNLVHHISDETVNIMCELLKQYIKLKIGSDIEEIYICFRLLKRFAAKSPFFLQVYNTVFPYLQLRLDMDRVGHGEMEGLQLRLSEGRRSINFLTSGDIHFSVQLDVTCGQPLGVNAKSETPWKCPNHGEGKKFDPNPKSS 1477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi526g00038 1477 SMART Cyclin_C_2 194 296 IPR004367 -
Sebi526g00038 1477 Gene3D - 54 288 - -
Sebi526g00038 1477 MobiDBLite consensus disorder prediction 1461 1477 - -
Sebi526g00038 1477 ProSitePatterns Cyclins signature. 86 117 IPR006671 -
Sebi526g00038 1477 Gene3D - 767 921 IPR043128 -
Sebi526g00038 1477 FunFam DNA repair protein REV1 816 919 - -
Sebi526g00038 1477 MobiDBLite consensus disorder prediction 367 419 - -
Sebi526g00038 1477 CDD BRCT_Rev1 476 563 - -
Sebi526g00038 1477 Gene3D - 931 985 - -
Sebi526g00038 1477 Pfam impB/mucB/samB family 767 908 IPR001126 GO:0006281
Sebi526g00038 1477 SMART cyclin_7 91 175 IPR013763 -
Sebi526g00038 1477 SMART cyclin_7 186 266 IPR013763 -
Sebi526g00038 1477 Gene3D - 67 183 - -
Sebi526g00038 1477 FunFam G2/mitotic-specific cyclin 69 180 - -
Sebi526g00038 1477 Gene3D - 776 830 - -
Sebi526g00038 1477 FunFam DNA repair protein REV1 469 564 - -
Sebi526g00038 1477 SUPERFAMILY BRCT domain 444 565 IPR036420 -
Sebi526g00038 1477 PANTHER DNA REPAIR PROTEIN REV1 767 994 - -
Sebi526g00038 1477 SUPERFAMILY Cyclin-like 58 167 IPR036915 -
Sebi526g00038 1477 MobiDBLite consensus disorder prediction 607 621 - -
Sebi526g00038 1477 MobiDBLite consensus disorder prediction 661 713 - -
Sebi526g00038 1477 FunFam DNA repair protein REV1 776 830 - -
Sebi526g00038 1477 ProSiteProfiles UmuC domain profile. 759 940 IPR001126 GO:0006281
Sebi526g00038 1477 MobiDBLite consensus disorder prediction 1053 1084 - -
Sebi526g00038 1477 SUPERFAMILY DNA/RNA polymerases 767 990 IPR043502 -
Sebi526g00038 1477 SMART BRCT_7 474 553 IPR001357 -
Sebi526g00038 1477 MobiDBLite consensus disorder prediction 602 621 - -
Sebi526g00038 1477 SUPERFAMILY Cyclin-like 210 287 IPR036915 -
Sebi526g00038 1477 MobiDBLite consensus disorder prediction 681 713 - -
Sebi526g00038 1477 Gene3D BRCT domain 467 563 IPR036420 -
Sebi526g00038 1477 Pfam Cyclin, C-terminal domain 210 290 IPR004367 -
Sebi526g00038 1477 Pfam BRCT domain, a BRCA1 C-terminus domain 474 561 IPR001357 -
Sebi526g00038 1477 MobiDBLite consensus disorder prediction 1456 1477 - -
Sebi526g00038 1477 ProSiteProfiles BRCT domain profile. 472 563 IPR001357 -
Sebi526g00038 1477 Pfam Cyclin, N-terminal domain 56 166 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi526g00038 Sebi-Chr526 414030 450783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi526g00038 21 289 Core Cell Cycle Gene Families AT5G43080 42.667 8.62e-65 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi526g00038 K03515 - egt:105952115 761.525