Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi526g00028 ATGGCTTTGGAGGCTCTAAATCTAAATTCTCCAATGATGAGCGTAGAGGAAGAGGTGAAGAGGAAGCGATCCAAACGACCCCGTTTGGGGATCCCATCCAATTGTACAGATACAGAGGAAGAGTACCTTGCTCTCTGCCTCATCATGCTGGCCCACAACAAGACAGAACCAGAACCAGAGAGTCAGAGTCAGAGTCACAAGTGCAGCATCTGCAACAAAACCTTTCCATCTTACCAAGCACTCGGAGGCCACAAGGCAAGCCACCGCAAATCCTCACCCGAAGCCGACACCACCATCGGAATCGGAAAGATGCATCAGTGTTCCATCTGTCACAAGGTCTTCCCCACGGGTCAGGCTCTGGGCGGCCATAAGCGATGCCACTATGACCGTGCTTTTGACTTGAATTTGCCACCAATCACTCCTCCTCAGGATCAGGACCAAACCCCTTAA 450 0.5133 MALEALNLNSPMMSVEEEVKRKRSKRPRLGIPSNCTDTEEEYLALCLIMLAHNKTEPEPESQSQSHKCSICNKTFPSYQALGGHKASHRKSSPEADTTIGIGKMHQCSICHKVFPTGQALGGHKRCHYDRAFDLNLPPITPPQDQDQTP 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi526g00028 149 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 22 138 IPR044653 GO:0003700
Sebi526g00028 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Sebi526g00028 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 127 IPR013087 -
Sebi526g00028 149 Gene3D Classic Zinc Finger 64 127 - -
Sebi526g00028 149 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Sebi526g00028 149 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Sebi526g00028 149 Pfam C2H2-type zinc finger 105 129 - -
Sebi526g00028 149 Pfam C2H2-type zinc finger 66 90 - -
Sebi526g00028 149 SMART c2h2final6 105 127 IPR013087 -
Sebi526g00028 149 SMART c2h2final6 66 88 IPR013087 -
Sebi526g00028 149 SUPERFAMILY beta-beta-alpha zinc fingers 65 127 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi526g00028 Sebi-Chr526 320726 321175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi526g00028 1 149 C2H2 Transcription Factor Family AT5G43170 43.386 3.92e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi526g00028 zf-C2H2_6 5.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi526g00028 - - aprc:113869798 152.91