Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi526g00002 ATGGATTCAAGTGGGGGAGTTCTTCTTGCTTCTTATGTCATCAAACCCACCTCCTTGCCTCATCACCATGCCTGTGAACATGCACTTGATACACCATCCTGCTTAGCCCATGTCTCGCAACTAACTCAAGGCCCGATCTTCACCAGTACTAACAAATTCAATTTGCTCCGATCCTTCCTAATGAAGTCCACCTCACACATTCAGAAAGCTATGGACACAGCCAATGCTATAAAACTCAAGATTAACAATCCGAAGGAGGAAGCAACTTTGCACAACTGTGAACAGCTGATGGACTTGTCCATGGATAGAGTTTGGGACTCAATGATGGCTCTAACAAAAGAGGCCACTGATTCGCTGCAAGATGCACACACGTGGGTAAGCAGTGTGCTCACTAACCATGTCACTTGCTTGGATGGATTAGAGGGCTCAGCTCGGGCCTTGATGGAGGCCCAGCTTCAGGAACTGATATCCAGAGCAAGGACCTCCCTGGCCTTGCTTGTTCATGTTTTGCCCACAAATCCAGACCTCATTGATGAGCCACTCAATATTGGGGATTTCCCCTCGTGGGTTACAAGCAAGGATCGGAGGCTTTTGGAGTCTTCAGCTGGGGAGATCAAGCCCAATGTTGTGGTGGCTAAGGATGGGAGTGGCAAGTTCAAGACTGTTGCTGAGGCTGTGGCATCCGCACCCGACAACAGTAAGACAAGGTACGTTATCTATGTCAAGAAGGGAACTTACAAAGAAAATGTTGAAATTGGTAAGAAAAAGAAGAATGTGATGCTTGTGGGTGAAAGTATGGATGCAACGATAATCACCGGCAACTTGAATTATATCGATGGAACAGGCACCTTTGATACTGCCACTGTTGGTATGGACCTTCCTCCTCCCCTACTCTTTTTCCTATATATCTTTCCTTTCCTTGTGTCTCTTAGCATTGGGTTTTGGGCCTTTGGTTTTGCAGCTGCTGTTGGAGATGGGTTTATAGCCCAGGACATATGGTTCCAAAACACAGCAGGCCCACAGAAGCATCAGGCAGTGGCTCTCCGCGTCGGCGCTGACATGTCCGTCATAAACCGCTGCCGCATTGACGCCTATCAAGACACTCTCTACGCCCACAGTAACAGGCAGTTCTACCGTGACTCTTACATTACCGGAACAGTTGATTTCATCTTTGGAAATGCAGCTGTGGTCTTCCAAAAGTGCAAGCTGGTGGCCCGAAAGCCCATGGATAACCAGAAAAACATGATCACGGCCCAAGGACGAATAGATCCAAACCAGAACACAGGAACATCAATTCAGCAATGTGACCTGACACCAAGCTCAGATCTTAAGCCCGTTGTGGGCTCAATAAAAACTTATCTGGGCCGCCCATGGAAGAATTTCTCTAGAACCGTTGTGATGCAATCCTTTCTGAGCACTCATATTGACCCAACAGGATGGGCAGAATGGGATGCCGAGCATAAGGACTATTTGAAAACGTTATATTATGGAGAATACATGAACAAAGGGCCTGGTGCTGGTATAAGCAAGAGAGTGAATTGGCCCGGTTACCATGTCATCAAAAGTGCAACAGAGGCAAGTAAGTTTACAGTAACACAGCTCATCCAAGGTAAAGGGAAGGCTTTGCATGTGACAGCAGCATTTCCTCTGAAGAATGATGACGAATGGATTCAAAAAGATTGGATGGACTTGGAGGAAAACCGGCTTCCCTGTTTCAATGTTTTTTCTAGCACCTTTATCTCCATAATCCTCTTGAGCACCAATAAGCTTGTGATTCCACCATGGCAACCAAGATTAAAGGGATCTACAAAAGTTTCAAATACATTACCCAAATTTTTGTTGGGAAGTGGGGGAGTTGTAGTTGTGAAGGAGCGGGAGATGGAAATTGGGTATCCGACAGATGTTAAGCACGTGGCTCACATTGGATGGGATGGTCCCTCCGGGAATGGACCCAGTTGGATGAATGAATTTAAAACAGCACCTGATTTTTCAACATCAATTGGTAGCATGAGTGAACGAAAAGACCCCAATCCAATGGCCATCACCACATCATGGTCCACCCGAGATTTTGAAGAGCCCATAGGAAGCCAACAAAAACCAAACACTTATGAAGACATTCCATCTTCTCATGCTCCTAAGAAGCCCAAGGGAAAAAAGTCTAAGTCAGCTTCCTCTCCCAGATCTTCATCAAGAGATTCAAGACAGTCAAGAGCAGCAAGATCAAAGGCTATGTATTGCGAGAGAGAAGCAACATCAATTGCTCAACTCTAG 2271 0.4606 MDSSGGVLLASYVIKPTSLPHHHACEHALDTPSCLAHVSQLTQGPIFTSTNKFNLLRSFLMKSTSHIQKAMDTANAIKLKINNPKEEATLHNCEQLMDLSMDRVWDSMMALTKEATDSLQDAHTWVSSVLTNHVTCLDGLEGSARALMEAQLQELISRARTSLALLVHVLPTNPDLIDEPLNIGDFPSWVTSKDRRLLESSAGEIKPNVVVAKDGSGKFKTVAEAVASAPDNSKTRYVIYVKKGTYKENVEIGKKKKNVMLVGESMDATIITGNLNYIDGTGTFDTATVGMDLPPPLLFFLYIFPFLVSLSIGFWAFGFAAAVGDGFIAQDIWFQNTAGPQKHQAVALRVGADMSVINRCRIDAYQDTLYAHSNRQFYRDSYITGTVDFIFGNAAVVFQKCKLVARKPMDNQKNMITAQGRIDPNQNTGTSIQQCDLTPSSDLKPVVGSIKTYLGRPWKNFSRTVVMQSFLSTHIDPTGWAEWDAEHKDYLKTLYYGEYMNKGPGAGISKRVNWPGYHVIKSATEASKFTVTQLIQGKGKALHVTAAFPLKNDDEWIQKDWMDLEENRLPCFNVFSSTFISIILLSTNKLVIPPWQPRLKGSTKVSNTLPKFLLGSGGVVVVKEREMEIGYPTDVKHVAHIGWDGPSGNGPSWMNEFKTAPDFSTSIGSMSERKDPNPMAITTSWSTRDFEEPIGSQQKPNTYEDIPSSHAPKKPKGKKSKSASSPRSSSRDSRQSRAARSKAMYCEREATSIAQL 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi526g00002 756 Pfam Pectinesterase 321 537 IPR000070 GO:0030599|GO:0042545
Sebi526g00002 756 Pfam Pectinesterase 208 291 IPR000070 GO:0030599|GO:0042545
Sebi526g00002 756 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 169 IPR035513 -
Sebi526g00002 756 SUPERFAMILY Pectin lyase-like 206 290 IPR011050 -
Sebi526g00002 756 MobiDBLite consensus disorder prediction 664 756 - -
Sebi526g00002 756 ProSiteProfiles CRIB domain profile. 629 642 IPR000095 -
Sebi526g00002 756 Gene3D - 202 548 IPR012334 -
Sebi526g00002 756 NCBIfam pectinesterase inhibitor domain 23 145 IPR006501 GO:0004857
Sebi526g00002 756 ProSitePatterns Pectinesterase signature 2. 383 392 IPR033131 -
Sebi526g00002 756 SUPERFAMILY Pectin lyase-like 315 538 IPR011050 -
Sebi526g00002 756 Pfam P21-Rho-binding domain 628 660 IPR000095 -
Sebi526g00002 756 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Sebi526g00002 756 FunFam Elongation factor Ts, mitochondrial 622 668 - -
Sebi526g00002 756 SMART PMEI_2 15 165 IPR006501 GO:0004857
Sebi526g00002 756 Pfam Plant invertase/pectin methylesterase inhibitor 23 157 IPR006501 GO:0004857
Sebi526g00002 756 CDD CRIB 627 660 - -
Sebi526g00002 756 SMART PBD_5 629 660 IPR000095 -
Sebi526g00002 756 MobiDBLite consensus disorder prediction 664 705 - -
Sebi526g00002 756 CDD PMEI-like_4 27 167 - -
Sebi526g00002 756 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 23 165 IPR035513 -
Sebi526g00002 756 PANTHER PECTINESTERASE 22 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi526g00002 Sebi-Chr526 12261 22884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi526g00002 19 537 Carbohydrate Esterase AT1G11580 55.133 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi526g00002 K01051 - gmx:100815836 781.941