Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi525g00022 ATGGTTAGCGTTAAAGGAACTTCGTTCATCAATGGGATAAGGGCAAAGGATTGGCCCATAAAAACCGAACCTTGCCGGAACTGGACCGGAGTTCAGTGCCGGAACGGTCGAGTTGTGGGTATCAATGTTTCTGGGTTGAAGCGAACCCGAGTGGGTCGTCTTAACCCAAGCTTCGAAGTGGATTCTCTTGCCAATTTTACCCTCTTGGACTCGTTCAACGCTTCTGGGTTCATGCTTAATGGGTCTATTCCTGATTGGTTTGGTGAGAATCTTGGTGCGCTTCAAGTGCTTGACCTAAGGTCTTGTTCTATAACGGGTATGATTCCTGGTTCACTTGGGGGTTTGAGTAGTTTGAAGTTTTTGCTCCTTTCAAGGAATAGTCTTACTGGTAGAATGCCTTCAACGTTGGGAATGTTATCTGGGCTTTCTGTTCTTGATCTCTCTGAGAACATGCTTTCAGGACCAGTGCCTAGCTCTTTATCTAAGCTTGGGAACCTTACAAGGCTTGATCTTTCTTCTAATTACTTATATGGGTCTATTCCACCTGAACTGGGTGCCCTTTCAAATCTCCAAAAATTGAACCTTTCTGGGAATTCTTTCACTGCCTTGGTTCCATCTCAACTGGTAACCTTTCCAAGTTGTGGGAATTCATTTGGTGGTGTTCTTCCTGCTATGTTGTGGTCATTGCCTAGCTTGCGTTTTGTTGATGTGTCCAGCAACAACCTCACTGGTCCACTGCCTAAATTGTCTAGTTCAAATGTCAACTCTACTGGTGCCATGTTCAATCTCTCAAACAATTTGTTCTATGGACATGTAAATATTTCATTGAACAAGTTTGAAATTGATTTGTCTGGTAATTATTTGGAAGGTGAGGTGCAAGTTGGTGGTCTTAATAATGTTACTCTAGCTAGAAATTGCCTGCAGAAGATTTCAAACCAGAGGGGTTTGGAAGAGTGTAGACAGTTTTATCTTCAGAGAAATTTACCCTTTGATGCTGGTGCACAAGAACAAGCACAACCTCCATTACAAGAATCTGAGTCTAAAAGCAACAAGCGAGTTGTATTCATACTGAGAGAATCATATGTTGTGGAATTGGAATTATTAAGCAAGGTTTCACATGAAAGACTGGTCCCAATCCTGGGGCACTGCTTGGAGAATGAGAGGGAGAAATGCATAGTTTACAAGTATATGCCAAATGGAGATTTGGCTACTTCCTTGCACAGAGTTTCTGGTTCAGATGGTAAATTACAGTCCCTGGATTGGATCACAAGATTGAAAATTGCAATAGGAGCTGCTGAAGGCCTGGCTTACCTACACGAGTGCAGCCCTCCCCTTGTTCACAGAGATGTCCGAGCTAGCAGTATACTTCTTGATGATAAATTTGAAGTGCGACTTGGAAGTTTGAGTGAGGTTACTGCCCAAGGAGATCTTCATCAGAATGTCATCTCAAGGGTTTTCAGCAAGCCACCATCTTCTAATCAAGGAAATTCTGGTAGATCATCTGTGACATGTGCCTATGATGTCTATTGTTTTGGGAAGATTTTACTTCAGCTTGTTACTGGTAATCTTGATGTCAGCAACTCTGAAGATGACACAACAAAAGAATGGTTAGAGCAAACCCTGCGTTACATCAGCATATTCGACAAAGAACGGTTGACTAAGATTGTTGACCCATCTTTGATTGTGGATGATGACTTATTAGAAGAGGTATGGGCTATGGCAATTGTGGCAAAGTCATGCTTGAATCCCAAGCCATCCAAACGTCCTCCTATGAGACATGTCCTCAAAGCATTGGAAAATCCATTGAAGATTGTCAGAGAAGAAAATTTCAGCTCAGCAAAGTTGAGAACAACTTCATCTAATAGATCTTGGAACACTGCATTCTTTGGTAGCTGGAGACACAGTTCATCAGAGAGTGCTGTTGCCACAGCACATACAAACAGAGGGGTCCTAGTGGCATTAAACAAGCAGGAAGAGTAG 1980 0.4247 MVSVKGTSFINGIRAKDWPIKTEPCRNWTGVQCRNGRVVGINVSGLKRTRVGRLNPSFEVDSLANFTLLDSFNASGFMLNGSIPDWFGENLGALQVLDLRSCSITGMIPGSLGGLSSLKFLLLSRNSLTGRMPSTLGMLSGLSVLDLSENMLSGPVPSSLSKLGNLTRLDLSSNYLYGSIPPELGALSNLQKLNLSGNSFTALVPSQLVTFPSCGNSFGGVLPAMLWSLPSLRFVDVSSNNLTGPLPKLSSSNVNSTGAMFNLSNNLFYGHVNISLNKFEIDLSGNYLEGEVQVGGLNNVTLARNCLQKISNQRGLEECRQFYLQRNLPFDAGAQEQAQPPLQESESKSNKRVVFILRESYVVELELLSKVSHERLVPILGHCLENEREKCIVYKYMPNGDLATSLHRVSGSDGKLQSLDWITRLKIAIGAAEGLAYLHECSPPLVHRDVRASSILLDDKFEVRLGSLSEVTAQGDLHQNVISRVFSKPPSSNQGNSGRSSVTCAYDVYCFGKILLQLVTGNLDVSNSEDDTTKEWLEQTLRYISIFDKERLTKIVDPSLIVDDDLLEEVWAMAIVAKSCLNPKPSKRPPMRHVLKALENPLKIVREENFSSAKLRTTSSNRSWNTAFFGSWRHSSSESAVATAHTNRGVLVALNKQEE 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi525g00022 659 Gene3D Transferase(Phosphotransferase) domain 1 401 622 - -
Sebi525g00022 659 Gene3D Phosphorylase Kinase; domain 1 338 400 - -
Sebi525g00022 659 Pfam Protein tyrosine and serine/threonine kinase 359 596 IPR001245 GO:0004672|GO:0006468
Sebi525g00022 659 ProSiteProfiles Protein kinase domain profile. 286 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi525g00022 659 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 135 270 IPR046959 -
Sebi525g00022 659 SUPERFAMILY Protein kinase-like (PK-like) 358 598 IPR011009 -
Sebi525g00022 659 Gene3D Ribonuclease Inhibitor 4 210 IPR032675 -
Sebi525g00022 659 Gene3D Ribonuclease Inhibitor 211 331 IPR032675 -
Sebi525g00022 659 SUPERFAMILY L domain-like 21 248 - -
Sebi525g00022 659 SMART LRR_typ_2 139 162 IPR003591 -
Sebi525g00022 659 SMART LRR_typ_2 229 252 IPR003591 -
Sebi525g00022 659 SMART LRR_typ_2 115 138 IPR003591 -
Sebi525g00022 659 SMART LRR_typ_2 187 210 IPR003591 -
Sebi525g00022 659 SMART LRR_typ_2 91 114 IPR003591 -
Sebi525g00022 659 SMART LRR_typ_2 163 186 IPR003591 -
Sebi525g00022 659 SUPERFAMILY L domain-like 207 327 - -
Sebi525g00022 659 FunFam Putative LRR receptor-like serine/threonine-protein kinase 397 618 - -
Sebi525g00022 659 FunFam Leucine-rich repeat receptor protein kinase EMS1 83 169 - -
Sebi525g00022 659 Pfam Leucine rich repeat 123 176 IPR001611 GO:0005515
Sebi525g00022 659 Pfam Leucine Rich Repeat 94 115 IPR001611 GO:0005515
Sebi525g00022 659 Pfam Leucine Rich Repeat 189 206 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi525g00022 Sebi-Chr525 445783 449377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi525g00022 359 474 Miscellaneous Gene Families AT4G39270 59.664 9.30e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Sebi525g00022 PK_Tyr_Ser-Thr 2.2e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi525g00022 - - adu:107476667 579.711