Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi524g00029 | ATAAGATACAGGCCTGATGCACCACTTGTACTCCGTGGGATCACATGCACATTTGAAGGAGGGCACAAAATTGGTATTGTTGGCCGAACAGGCAGTGGCAAGTCCACTCTTATTGGTGCCTTATTCCGTCTTGTGGAACCAGCAGGTGGAAAAATCATAGTTGATGGCATTGACATTTGCTCCATTGGACTTCATGATTTGAGGTCACGGTTAGGTATTATACCTCAGGATCCTACTCTCTTTAATGGGACAGTCAGATACAATATGGACCCATTATCTCAACACAGTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCAAGAGGCTGTCCAAGAGAAAGAAGGGGGCTTAGATTCCTCAGTTGTGGAAGATGGGGCAAACTGGAGCATGGGACAACGGCAGTTATTCTGTTTGGGGCGTGCTCTTCTAAGGAGAAGTCGGATATTGGTGCTTGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTCTGCAGAAAACCATTAGGACTGAGTTTGCAGATTGTACAGTAATCACAGTAGCTCACAGGATACCAACTGTGATGGATTGCACTAAGGTCCTTGCCATTAGTGATGGAAAACTGGTAGAGTATGATGAGCCAATGAACTTGATGAAGAGAGAAGGGTCGTTGTTTGGGAAGCTTGTCAAAGAATACTGGTCTCATTTTCAGTCTGCAGAATCTCATTGA | 723 | 0.4426 | IRYRPDAPLVLRGITCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIIVDGIDICSIGLHDLRSRLGIIPQDPTLFNGTVRYNMDPLSQHSDQEIWEVLGKCQLQEAVQEKEGGLDSSVVEDGANWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLAISDGKLVEYDEPMNLMKREGSLFGKLVKEYWSHFQSAESH | 240 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi524g00029 | 240 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1 | 228 | IPR003439 | GO:0005524 | |
| Sebi524g00029 | 240 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 1 | 228 | - | - | |
| Sebi524g00029 | 240 | SMART | AAA_5 | 20 | 212 | IPR003593 | GO:0016887 | |
| Sebi524g00029 | 240 | Pfam | ABC transporter | 11 | 159 | IPR003439 | GO:0005524 | |
| Sebi524g00029 | 240 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 2 | 221 | IPR027417 | - | |
| Sebi524g00029 | 240 | CDD | ABCC_MRP_domain2 | 1 | 212 | - | - | |
| Sebi524g00029 | 240 | FunFam | ABC transporter C family member 3 | 1 | 229 | - | - | |
| Sebi524g00029 | 240 | Gene3D | - | 1 | 229 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi524g00029 | Sebi-Chr524 | 609961 | 611162 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi524g00029 | 4 | 240 | Calmodulin-binding Proteins | AT2G36910 | 29.876 | 1.15e-30 | 117 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi524g00029 | K05666 | - | lja:Lj5g3v1961200.1 | 476.863 |