Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi524g00028 ATGGAGGGTTTTTGGAGCGTGTTTTGTGGGGAATCTGGTTGTTCAGAGAGTGGAACAAAGCCTTGCAGTTATGATTTTAAGTTTCTCATTGATCCTTCCACATGTATCAACCATTTGTTCATATCTTGCTTTGATGTGTTGCTGCTCATCATGCTCTTAGTTATAATGATCCACAAGTCATCATTAAAACCATTTGAAGGTCTAACACAGGTGCAAAGATATTCAAATTTGCAACTAGTTTCTGCTACAGTCAATGCCGCTCTTGGATTGTTGCATTTGTTCTTAGGCATTTCGGTTTTAGAAGAAAAGTTAAGGAAAAGCCAAACTTTGTTGCCTCTTAATTTGTGGTTGCTAGAATTCTTTCAGGGATTAACATGGTTGTTAGTGGGTTTAACAATAAGTCTTAAGTTGAAGAAGCAACTTCCAAGGACATGGTTAAGGCTTTTCTCTATTCTAATCTTCTTGGTTTCTGGTGTTTTCTGTGCTTTATCCTTGTTTTATGCAATCAACAGTAGAGAACTGTCTCTCAAGGTAGCTTTAGATGTTCTCTCTTTTCCAGGGGCAATATTATTGCTATTATGTACATACAAGGAATCTAAGTATAGGGACACTGACAGAGAAATTGATGAAAGCCTTTACACCCCTTTGAATGGTGAGTCCAATAAGAATGATTCTATTAGCTATGTAAATGTAACCTTATTTGCCAATGCTGGATTCTTCAGTAAGATGTCATTTTGGTGGCTGAATCCATTGATGAAGAGGGGAAAAGAGAAAACACTTCAGGATGAAGATGTTCCAAAGTTGAGGGAGGAAGATAGAGCAGAAAGTTGTTATTTGTTGTTTCTAGATCACTTGAACAAGCAGAAACAGAAGGATTCTTCCTCACAGCCATCAATTTTGAGGACAATAATTTTATGCCATTGGAGAGAAATTTTGATATCAGGATTCTTTGCATTGCTAAAGGTACTTGCTCTGTCTTCAGGACCTCTGCTTCTGAATTCCTTTATATTGGTTGCTGAGGGTAATGAAAGTTTCAAATATGAAGGTTTTGTATTGGCCATATCACTTTTCCTTATGAAAATTTTAGAATCCCTATCACAAAGGCAGTGGTACTTCCGTTCTAGACTTATTGGTGTGAAAGTTAGGTCACTGCTAACTGCAGCCATTTATAGAAAGCAACTGAGGTTATCCAATTCTGCTAGATTGATGCACTCTGCTGGTGAGATAATGAATTATGTGGCTGTGGATGCTTATAGAATTGGAGAATTTCCCTATTGGTTTCACCAGACATGGACAACTAGCTTCCAGCTATGTATCTCATTAGTACTACTTTACCATGCTGTTGGGCTAGCTACAGTTGCCACATTGGTGGTGATTGTTATCACAGTGCTTTGCAATACCCCACTTGCAAAGTTACAGCACAAGTTTCAAACCAAACTTATGGTGGCACAAGATGAGAGATTGAGGGCTAGTTCTGAGGCTCTTGTGAATATGAAGGTGCTGAAGTTGTATGCATGGGAAACCAACTTTAAAAATGTTATAGAAGGATTAAGGAATGTGGAGCTCAAATGGTTGTCTGCAGTGCAATTGAGAAAGGCATACAACACATTTCTCTTTTGGTCCTCACCTGTTTTGGTCTCTGCTGCTTCCTTTGGGGCATGTTACTTTCTTGATGTTCCTTTGCATGCAAATAATGTTTTCACTTTTGTTGCAACTTTGCGCCTTGTTCAAGAGCCAATTAGAACCATCCCTGATGTTATTGGGGTGGTTATTCAAGCAAAAGTTGCATTTACTAGGATTGTAAAATTCCTGGAAGCACCTGAACTTCAGAATGCAAATGTCAGTAAGAGGTGCTTTAATGACAATATGAGGGGCTCAATTTCAATCAAATATGCTGACTTTTCATGGGAAGATAATGTACCAAAGCCAACACTGAGAAAAATAAATTTGGAGGTTAGACTTGGACAAAAGGTAGCTATTTGTGGAGAGGTTGGATCAGGCAAATCAACTCTCTTAGCAGCAATTCTCAAAGAAGTTCCTTGTACTCAGGGGACTATTGATGTTTATGGGAAGTTTGCCTATGTTTCTCAAACAGCATGGATACAGACAGGAACAATAAGGGAAAATATATTGTTTGGATCAGCTATGGATGCTGAAAAATATCAGGAAACGCTTCATAGATCTTCACTAGTGAAAGATCTTGAGTTGTTTCCCCATGGTGATCTCACTGAAATAGGAGAAAGAGGGGTGAACCTGAGCGGAGGTCAGAAGCAGCGAATTCAACTTGCACGTGCTCTGTATCAGAATGCTGATATATATCTATTGGATGATCCATTTAGTGCTGTGGATGCACAAACTGCCACAAATTTGTTTACTGAATACATCATGGAAGGACTTGCTGGGAAGACAGTCTTGCTCGTGACTCATCAAGTTGACTTCCTTCCAGCATTTGATTCTGTTTTGTTGATGTCAGATGGGGAAATCATACAATCTGCTCCTTATCACCATTTGTTGATCTCAAGTCAAGAATTTCAAGATCTTGTGAATGCTCACAAAGAGACTGCTGGTTCTGACCGGCTTGTGGATGCTACTTCTTCACATAGACATTCAAATTGTGCTGTGGAGATCAGGAAAACATATGTGGAGAAGGAGAAGCAATTTGAAGCATCAAAAGGTGATCAATTGATTAAGCAAGAAGAGAGAGAGCAAGGAGACCAAGGGTTCAAGCCTTACTTACAGTATTTGAATCAAAACAAAGGATATCTATACTTTTCTGTGGCTTCTCTTTGTAACCTTGTATTTGTGATTGGCCTAATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATCCTCAACTTCTGAACTCCCTTTTTCATGCACCCATGTCATTTTATGACTCTACACCTTTGGGAAGGATACTTACTAGGGTCTCCTCTGATCTCAGCATTGCTGATCTTGATCTCCCGTTTATCTTTCTTTTTGTTGTGGCAGCTACTATGAGTTGTTATGCCAGTCTTACAGTTTTAGCAGTAGTTACTTGGCAAGTCTTGTTTGTCTCCATACCAATGATTTATTTTGCATTTCGCTTGCAGAAATATTACTTTGCATCTGCAAAAGAACTGATGAGGATGAATGGCACAACAAAATCCTTTGTTGCTAACCATCTTGCTGAATCTGTTGCTGGAGCTGTGACAATAAGGGCTTTTGAGGAGGAAGATCGTTTTTTCGCTAAGAATCTTGAACTAATTGATGTCAATGCTAGTCCTTTTTTCCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAACAGTCAGTGCAGTTGTTCTTGCATCTGCAGCACTTTGCATGGTTGTACTTCCACCTGGAACTTTCACATCTGTGGAGAGGCTAAATCAATATATGCATATACCAAGTGAGGCCCCAGAAGTAATAGAAGGAAGTCGTCCTCCTGTAAATTGGCCAGTTGCTGGTAGAGTAGAAATAGATAAACTGCAG 3507 0.3921 MEGFWSVFCGESGCSESGTKPCSYDFKFLIDPSTCINHLFISCFDVLLLIMLLVIMIHKSSLKPFEGLTQVQRYSNLQLVSATVNAALGLLHLFLGISVLEEKLRKSQTLLPLNLWLLEFFQGLTWLLVGLTISLKLKKQLPRTWLRLFSILIFLVSGVFCALSLFYAINSRELSLKVALDVLSFPGAILLLLCTYKESKYRDTDREIDESLYTPLNGESNKNDSISYVNVTLFANAGFFSKMSFWWLNPLMKRGKEKTLQDEDVPKLREEDRAESCYLLFLDHLNKQKQKDSSSQPSILRTIILCHWREILISGFFALLKVLALSSGPLLLNSFILVAEGNESFKYEGFVLAISLFLMKILESLSQRQWYFRSRLIGVKVRSLLTAAIYRKQLRLSNSARLMHSAGEIMNYVAVDAYRIGEFPYWFHQTWTTSFQLCISLVLLYHAVGLATVATLVVIVITVLCNTPLAKLQHKFQTKLMVAQDERLRASSEALVNMKVLKLYAWETNFKNVIEGLRNVELKWLSAVQLRKAYNTFLFWSSPVLVSAASFGACYFLDVPLHANNVFTFVATLRLVQEPIRTIPDVIGVVIQAKVAFTRIVKFLEAPELQNANVSKRCFNDNMRGSISIKYADFSWEDNVPKPTLRKINLEVRLGQKVAICGEVGSGKSTLLAAILKEVPCTQGTIDVYGKFAYVSQTAWIQTGTIRENILFGSAMDAEKYQETLHRSSLVKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAQTATNLFTEYIMEGLAGKTVLLVTHQVDFLPAFDSVLLMSDGEIIQSAPYHHLLISSQEFQDLVNAHKETAGSDRLVDATSSHRHSNCAVEIRKTYVEKEKQFEASKGDQLIKQEEREQGDQGFKPYLQYLNQNKGYLYFSVASLCNLVFVIGLILQNSWMAANVDNPQLLNSLFHAPMSFYDSTPLGRILTRVSSDLSIADLDLPFIFLFVVAATMSCYASLTVLAVVTWQVLFVSIPMIYFAFRLQKYYFASAKELMRMNGTTKSFVANHLAESVAGAVTIRAFEEEDRFFAKNLELIDVNASPFFHSFAANEWLIQRLETVSAVVLASAALCMVVLPPGTFTSVERLNQYMHIPSEAPEVIEGSRPPVNWPVAGRVEIDKLQ 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi524g00028 1169 CDD ABC_6TM_ABCC_D1 313 600 IPR044746 GO:0140359
Sebi524g00028 1169 Gene3D ABC transporter type 1, transmembrane domain 283 609 IPR036640 GO:0005524|GO:0016020
Sebi524g00028 1169 Gene3D ABC transporter type 1, transmembrane domain 886 1144 IPR036640 GO:0005524|GO:0016020
Sebi524g00028 1169 FunFam ABC transporter C family member 10 610 863 - -
Sebi524g00028 1169 CDD ABCC_MRP_domain1 627 827 - -
Sebi524g00028 1169 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 312 592 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi524g00028 1169 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 629 850 IPR003439 GO:0005524
Sebi524g00028 1169 FunFam ABC transporter C family member 10 295 608 - -
Sebi524g00028 1169 Pfam ABC transporter 645 779 IPR003439 GO:0005524
Sebi524g00028 1169 Pfam ABC transporter transmembrane region 920 1119 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi524g00028 1169 Pfam ABC transporter transmembrane region 312 577 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi524g00028 1169 SUPERFAMILY ABC transporter transmembrane region 300 605 IPR036640 GO:0005524|GO:0016020
Sebi524g00028 1169 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 850 IPR027417 -
Sebi524g00028 1169 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 953 1131 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi524g00028 1169 ProSitePatterns ABC transporters family signature. 752 766 IPR017871 GO:0005524|GO:0016887
Sebi524g00028 1169 SUPERFAMILY ABC transporter transmembrane region 951 1143 IPR036640 GO:0005524|GO:0016020
Sebi524g00028 1169 Gene3D - 622 856 IPR027417 -
Sebi524g00028 1169 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 235 947 - -
Sebi524g00028 1169 CDD ABC_6TM_ABCC_D2 920 1138 IPR044726 GO:0140359
Sebi524g00028 1169 SMART AAA_5 654 827 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi524g00028 Sebi-Chr524 604281 609453 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi524g00028 621 890 Calmodulin-binding Proteins AT2G36910 28.239 1.62e-22 103