Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi524g00026 ATGGCACAACAAAAGGAATTCAATCTCAGGAAGCCTTCTGCATATCATTATGACATATTGTTGCTAGGATTCATGACTTTGCTTTGTGTATTAATTGGCTTACCCCCTTCAAATGGAGTTCTGCCTCAATCTCCTATGCATACCAAGACCCTGGCTGTTCTCAAGAGACAGTTGATCCGAAGAAAGGTGGTTAAAAGTGCCAAGGAAAGCATAAGACACAAAGCTAGCAACTCTGAAATCTATGGGAAGATGCAAGCAGTGTTTATAGAAATGCAGTGCATGTTTATTAGCATTATATTTTGGGAAAAGACATCACTTGAACAAGCAGAAAGAGAAGGATTCTTCCTCACAGCCATCAGTTTTGAGGACAATAATTTTATGCCACTGGAGAGAAACCTTGATATCAGGATTCTTTGCATTGCTAAAGAATCCCTATCACAAAGGCAGTGGTATTTCCGTTCTAGACTTATTGGTGTGAAAGTTAGGTCACTGCTAACTGCAGCCATTTATAGAAAGCAACTGAGGTTATCCAATTCTGCTAGATTGATGCACTCTGCTGGTGAGATAATGAATTATGTGGCTGTGGATGCTTATAGAATTGGAGAATTTCCCTATTGGTTTCACCAGACATGGACAACTAGCTTCCAGCTATGTATCTCATTAGTACTACTTTACCATGCTGTTGGGCTAGCTACAATTGCCACCTTGGTGGTGATTGTTATCACAGTGCTTTGCAATACCCCACTTGCAAAGTTACAACACAAGTTTCAGACCAAACTTATGGTGGCACAAGATGAGAGATTGAAGGCTAGTTCTGAGGCTCTTGTGAATATGAAGGTGTTGAAGTTGTATGCATGGGAAACCAACTTTAAAAATGTTATAGAAAGATTAAGGAATGTGGAGCTCAAATGGTTGTCTGCAGTGCAATTGATAAAGGCATACAACTCATTTCTCTTTTGGTCCTCACCTGTTTTGGTCTCTGCTGCTTCCTTTGGGGCATGTTACTTTCTTAATGTTCCTTTGCATGCAAATAATGTTTTCACTTTTGTGGCAACTTTCCGCCTTGTTCAAGAGCCAATTAGAAACATCCCTGATGTTATTGGGGTGGTTATTCAAGCAAAAGTTGCATTTACTCGGATTGTAAAATTCCTGGAAGCACCTGAACTGCAGAATGCAAATGTCGGTAAGAGGTGCTTTGATGACAATATGAGGGGATCAATTTCAATCAAGTATGCTGACTTTTCATGGGAAGATAATTTACCAAAGCCAACACTGAGAAAAATAAATTTGGAGGTTAGACTTGGACAAAAGGTAGCTATTTGTGGAAAGGTTGGATCAGGCAAATCAACTCTCTTAGCAGCAATTCTCAGAGAAGTTCCTTGTACTCAGGGAACTATTGATGTTTATGGGAAGTTTGCCTATGTTTCTCAAACAGCATGGATACAGACAGGTACAATAAGGGAAAATATATTGTTTGGATCAGCAATGGATGCTGAAAAATATCAGGAAACGCTTCATAGATCTTCACTAGTGAAAGATCTTGAGTTGTTTCCCCATGGTGATCTCACTGAAATAGGAGAAAGGGGGGTGAACTTGAGTGGAGGTCAGAAGCAGCGAGTTCAACTTGCGCGTGCTCTGTACCAGAATGCTGATATATATCTATTGGATGATCCATTTAGTGCTGTGGATGCACAAACTGCCACAAATTTGTTTACTGAATACATTATGGAAGGACTTGCTGGGAAGACAGTCTTGCTCGTGACTCATCAAGTTGACTTCCTTCCAGCATTTGATTCTGTTTTGTTGATGTCAGATGGGGAAATCATACAATCTGCTCCTTATCACAATTTGTTGACCTCAAGCCAAGAATTTCAAGACCTTGTGAATGCTCACAAAGAGACTGCTGGTTCTGACCGGCTTGTGGATGCTACTTCTTCACATATACATTCAAATTGTGCTAGAGAGATCAGGAAAACATATGTGGAGAAGGAGAAGCAGTTTGAAGCATCAAAAGGTGATCAATTGATTAAGCAAGAAGAGAGAGAGCAAGGAGACCAAGGGTTCAAGCCTTACTTACAGTATCTGAATCAGAACAAAGGATATCTATACTTTTCTGTGGCTACTCTTTGCAACCTTGTATTTGTGATTGGCCTAATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATCCTCAAGTTAGCACTTTGAGATTGATTCTAGTTTACTTGTTGATTGGAGTTACTTCAACATTATTCTTATTGATCAGAAGTCTTCTTACAGTTGCTTTGGGCCTTCAATCATCAAAGTCTTTATATTTACAGCTTCTGAACTCCCTTTTTCGTGCACCCATGTCATTTTATGACTCTACACCTTTGGGAAGGATACTTACTAGGGTCTCCTCTGATCTCAGCATTGTTGATCTTGATCTCCCGTTTATCTTTCTTTTTGTTGTGGTAGCTACTATGAGTTGTTATGCCAGTCTTACAGTTTTAGCAGTTGTTACTTGGCAAGTCTTGTTTGTCTCCATACCAATGATTTATTTTGCATTTCGCTTGCAGAAATATTACTTTGCATCTGCAAAAGAACTGATGAGGATGAATGGCACAACAAAATCATTTGTTGCTAACCATCTTGCTGAATCTGTTGCTGGAGCTGTGACAATAAGGGCTTTTGAGGAGGAAAATCGTTTTTTTGCTAAGAATCTTGAACTAATTGATGTCAATGCTAGTCCTTTTTTCCATAGTTTTGCAGCAAATGAGTGGCTGATCCAACGGTTAGAAACAGTTAGTGCAGTTGTTCTTGCATCTGCAGCACTTTGCATGGTTGTACTTCCACCTGGGACATTCACCTCTGGTGAGTGA 2865 0.3976 MAQQKEFNLRKPSAYHYDILLLGFMTLLCVLIGLPPSNGVLPQSPMHTKTLAVLKRQLIRRKVVKSAKESIRHKASNSEIYGKMQAVFIEMQCMFISIIFWEKTSLEQAEREGFFLTAISFEDNNFMPLERNLDIRILCIAKESLSQRQWYFRSRLIGVKVRSLLTAAIYRKQLRLSNSARLMHSAGEIMNYVAVDAYRIGEFPYWFHQTWTTSFQLCISLVLLYHAVGLATIATLVVIVITVLCNTPLAKLQHKFQTKLMVAQDERLKASSEALVNMKVLKLYAWETNFKNVIERLRNVELKWLSAVQLIKAYNSFLFWSSPVLVSAASFGACYFLNVPLHANNVFTFVATFRLVQEPIRNIPDVIGVVIQAKVAFTRIVKFLEAPELQNANVGKRCFDDNMRGSISIKYADFSWEDNLPKPTLRKINLEVRLGQKVAICGKVGSGKSTLLAAILREVPCTQGTIDVYGKFAYVSQTAWIQTGTIRENILFGSAMDAEKYQETLHRSSLVKDLELFPHGDLTEIGERGVNLSGGQKQRVQLARALYQNADIYLLDDPFSAVDAQTATNLFTEYIMEGLAGKTVLLVTHQVDFLPAFDSVLLMSDGEIIQSAPYHNLLTSSQEFQDLVNAHKETAGSDRLVDATSSHIHSNCAREIRKTYVEKEKQFEASKGDQLIKQEEREQGDQGFKPYLQYLNQNKGYLYFSVATLCNLVFVIGLILQNSWMAANVDNPQVSTLRLILVYLLIGVTSTLFLLIRSLLTVALGLQSSKSLYLQLLNSLFRAPMSFYDSTPLGRILTRVSSDLSIVDLDLPFIFLFVVVATMSCYASLTVLAVVTWQVLFVSIPMIYFAFRLQKYYFASAKELMRMNGTTKSFVANHLAESVAGAVTIRAFEEENRFFAKNLELIDVNASPFFHSFAANEWLIQRLETVSAVVLASAALCMVVLPPGTFTSGE 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi524g00026 954 CDD ABC_6TM_ABCC_D1 137 380 IPR044746 GO:0140359
Sebi524g00026 954 Pfam HCO3- transporter family 2 57 IPR011531 GO:0006820|GO:0016020
Sebi524g00026 954 Pfam ABC transporter transmembrane region 155 359 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi524g00026 954 Pfam ABC transporter transmembrane region 706 941 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi524g00026 954 FunFam ABC transporter C family member 10 390 643 - -
Sebi524g00026 954 Pfam ABC transporter 425 559 IPR003439 GO:0005524
Sebi524g00026 954 FunFam ABC transporter C family member 5 667 954 - -
Sebi524g00026 954 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 409 630 IPR003439 GO:0005524
Sebi524g00026 954 SMART AAA_5 434 607 IPR003593 GO:0016887
Sebi524g00026 954 ProSitePatterns ABC transporters family signature. 532 546 IPR017871 GO:0005524|GO:0016887
Sebi524g00026 954 SUPERFAMILY ABC transporter transmembrane region 691 945 IPR036640 GO:0005524|GO:0016020
Sebi524g00026 954 CDD ABCC_MRP_domain1 407 607 - -
Sebi524g00026 954 Gene3D - 384 650 IPR027417 -
Sebi524g00026 954 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 144 372 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi524g00026 954 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 141 947 - -
Sebi524g00026 954 Gene3D ABC transporter type 1, transmembrane domain 666 954 IPR036640 GO:0005524|GO:0016020
Sebi524g00026 954 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 714 945 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi524g00026 954 FunFam ABC transporter C family member 10 62 388 - -
Sebi524g00026 954 SUPERFAMILY ABC transporter transmembrane region 143 388 IPR036640 GO:0005524|GO:0016020
Sebi524g00026 954 CDD ABC_6TM_ABCC_D2 704 946 IPR044726 GO:0140359
Sebi524g00026 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 630 IPR027417 -
Sebi524g00026 954 Gene3D ABC transporter type 1, transmembrane domain 136 383 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi524g00026 Sebi-Chr524 590957 598526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi524g00026 1 92 Antiporters AT1G15460 79.348 8.65e-42 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi524g00026 K05666 - gmx:100811468 1363.21