Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi524g00025 ATGTCATTTTGGTGGCTGAATCCATTGATGAAGAGGGGTAAAGAGAAAACACTTCAGGATGAAGATGTCCCAAAGTTGCGGGAGGAAGATAGAGCAGAAAGTTGTTATTTGCAGTTTCTAGACCATTTGAACAAGCAGAAACAGAAGGATCCATCCTCACAACCATCTGTTTTGAGGACGATAATTATATGCCACCGAAGAGAAATCTTGGTATCAGGATTCTTTGCATTGCTCAAGGTACTTTCTCTGTCTTCTGGACCTTTGCTTCTGAATTCCTTCATACTGGTAGCTGAGGGTAATGAGAGTTTCAAATACGAAGGTTTTGTATTGGCCATATCACTTTTCCTTGCAAAAGTCATAGAATCCCTATCACAAAGGCAGTGGTACTTCCGCTCCAGACTTATTGGTGTGAAAGTTAGGTCACTGCTAACTGCAGCCATTTATGGAAAGCAATTGAGGTTATCCAATTCTGCTAGATTGATGCACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGAGAATTTCCCTATTGGTTTCACCAGACATGGACAACTAGCTTCCAGCTATGTATCTCATTGGTAATACTTTTTAATGCTGTTGGGTTAGCTACAATTGCCTCCTTGGTGGTGATAGTTATCACAGTGCTTTGCAATACCCCACTTGCAAAGTTACAACACAAGTTTCAGACCAAACTAATGGTGGCACAGGATGAGAGATTGAAGGCTAGTTCTGAGGCTCTTGTGAATATGAAGGTGCTGAAGTTGTATGCTTGGGAAACCAACTTCAAAAATGTTATAGAAGGATTAAGGAATGTGGAGCTCAAATGGTTGTCTGCAGTGCAATTGAGAAAGGCATACAACACATTTCTCTTTTGGTCCTCACCTGTTTTGGTCTCTGCGGCTTCCTTTGGGGCGTGTTACTTTCTTAATGTTCCTTTGCATGCAAATAATGTTTTCACTTTTGTGGCAACTTTACGCCTTGTTCAAGATCCAATTAGAACCATCCCTGACGTTATTGGGGTGGTCATTCAGGCAAAAGTTGCATTCGCCCGTATTGTAAAATTCCTGGAGGCACCTGAACTACAGAATGCAAATGTCAGGAAGAGGTGTTTTAATGATAATATGAGGGGCTCGATTTCAATCAAGTCTGCTGATTTTTCATGGGAAGATAATTTACCAAAGCCAACACTAAGAAACATAAATTTTGATGTTAGACCTGGACAAAAGGTAGCTATTTGTGGAGAGGTCGGCTCAGGCAAATCAACTCTCTTAGCAGCAATTCTCAGAGAAGTTCCTAATACTCAGGGGACAATTGATGTTTATGGGAAATTTGCCTATGTTTCTCAAACAGCATGGATACAGACAGGAACGATAAGGGAAAATATATTGTTTGGATCAGCTATGGATGCTCAAAAATATCAGGAAACCCTTCATAGGTCTTCACTAGTGAAGGACCTTGAGTTATTTCCCTATGGGGATCTCACTGAAATAGGAGAGAGAGGGGTTAACCTGAGTGGAGGGCAGAAACAACGAATTCAACTTGCCCGTGCTCTCTATCAGAGTTCTGATATATACCTCTTGGATGATCCATTTAGTGCCGTTGATGCACAAACTGCCACAAATTTGTTTAAGGAATACATTATGGAAGGACTTGCTGGGAAGACAGTTTTGCTCGTGACTCATCAAGTTGATTTCCTTCCAGCATTTGATTCAGTTTTGTTGATGTCAGATGGGGAAATCATACAAGCTGCTCCTTATCACCATTTGTTGACATCAAGCCAAGAATTTCAGGACCTTGTGAATGCTCACAAAGAGACTGCTGGTTCTGATCGGCTTGTGGATATTACTTCTTCCAAGAGACATTCGAATTGTGCTAGAGAGATCAGGAAAATATATGTGGAGAAGGAGAAGCCGAGTGAAGCATTAAAAGGTGATCAATTGATTAAGCAAGAAGAAAGAGAGACAGGAGACCAAGGGTTCAAGCCTTACTTACAGTATCTGAATCAGAACAAAGGATATATATACTTCTCCATTGCATCTCTTTCTCACCTTATATTTGTTATTGGCCAAATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATCCTCAACTACTGAACTCCCTTTTTCGAGCACCTATGTCATTTTATGACTCCACACCTTTGGGACGGATACTTAGTAGGGTCTCCTCTGATCTCAGCATTGTTGATCTCGATGTCCCATTTGGCCTTCTTTTTGCTGTGGGAGCTACTACGAATTGTTATGCTAGTCTTACAGTTTTAGCAGTAGTTACTTGGCAAGTCTTGTTTGTCTCCATACCAATGATTTATTTTGCAATTCGCTTGCAGAGGTATTACTTCGCTTCTGCAAAAGAACTGATGCGGATGAATGGCACGACAAAATCCTTTGTAGCTAACCATCTTGCTGAATCTGTTGCTGGAGCTGTGACAATAAGGGCTTTTGGGGAGGAAGATCGATTTTTCACAAAGAATTTTGATCTAATTGATGTCAATGCTAGTCCTTTCTTCCATAGTTTTGCAGCAAATGAGTGGCTGATTCAACGGTTAGAAACAGTCAGTGCAGTTGTCCTTGCATCTGCAGCACTTTGCATGGTTGTACTTCCACCTGGGACATTCACCTCTGGATTTATTGGCATGGCTCTCTCTTATGGTCTTTCACTTAACAATTCCTTAGTATTTTCAATTCAAAATCAATGCAATATATCAAATTATATAATATCTGTGGAGAGGCTAAATCAATATATGCATATACCAAGTGAGGCCCCAGAAGTAATAGAAGGAAATCGTCCTCCTGTAAATTGGCCAGTTGCTGGTAGAGTAGAAATAGATGAACTGCAGATACGATACAGGCCTGATGCACCACTTGTACTCCGTGGGATCACATGCACATTTGAAGGAGGGCACAGAATCGGTATTGTTGGCCGGACAGGCAGTGGCAAGTCCACTCTCATTGGTGCTTTATTCCGTCTTGTGGAGCCAGCAGGTGGAAAAATCATAGTTGATGGCATTGACATTTGCTCCATTGGACTTCATGATTTGAGGTCACGGTTTGGTATTATACCTCAGGATCCTACTCTCTTTAATGGGACAGTCAGATACAATATGGACCCATTATCTCAACACAGTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCAAGAGGCTGTCCAAGAGAAAGAAGGGGGCTTAGACTCCTCAGTTGTTGAAGATGGGGCAAACTGGAGCATGGGACAACGACAGTTATTCTGTTTGGGGCGTGCTCTTCTAAGGAGAAGTCGGATATTGGTGCTTGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTCTGCAGAAAACCATTAGGACTGAGTTTGCAGATTGTACAGTAATCACAGTAGCTCACAGGATACCAACTGTGATGGATTGCACTAAGGTCCTTGCCATTAGTGATGGAAAACTGGTAGAGTATGATGAGCCAATGAATTTGATGAAAAGAGAAGGGTCGTTGTTTGGGAAGCTTGTCAAAGAATACTGGTCTCATTTTCAGTCTGCAGAATCTCATTGA 3603 0.4141 MSFWWLNPLMKRGKEKTLQDEDVPKLREEDRAESCYLQFLDHLNKQKQKDPSSQPSVLRTIIICHRREILVSGFFALLKVLSLSSGPLLLNSFILVAEGNESFKYEGFVLAISLFLAKVIESLSQRQWYFRSRLIGVKVRSLLTAAIYGKQLRLSNSARLMHSGGEIMNYVTVDAYRIGEFPYWFHQTWTTSFQLCISLVILFNAVGLATIASLVVIVITVLCNTPLAKLQHKFQTKLMVAQDERLKASSEALVNMKVLKLYAWETNFKNVIEGLRNVELKWLSAVQLRKAYNTFLFWSSPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFARIVKFLEAPELQNANVRKRCFNDNMRGSISIKSADFSWEDNLPKPTLRNINFDVRPGQKVAICGEVGSGKSTLLAAILREVPNTQGTIDVYGKFAYVSQTAWIQTGTIRENILFGSAMDAQKYQETLHRSSLVKDLELFPYGDLTEIGERGVNLSGGQKQRIQLARALYQSSDIYLLDDPFSAVDAQTATNLFKEYIMEGLAGKTVLLVTHQVDFLPAFDSVLLMSDGEIIQAAPYHHLLTSSQEFQDLVNAHKETAGSDRLVDITSSKRHSNCAREIRKIYVEKEKPSEALKGDQLIKQEERETGDQGFKPYLQYLNQNKGYIYFSIASLSHLIFVIGQILQNSWMAANVDNPQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLLFAVGATTNCYASLTVLAVVTWQVLFVSIPMIYFAIRLQRYYFASAKELMRMNGTTKSFVANHLAESVAGAVTIRAFGEEDRFFTKNFDLIDVNASPFFHSFAANEWLIQRLETVSAVVLASAALCMVVLPPGTFTSGFIGMALSYGLSLNNSLVFSIQNQCNISNYIISVERLNQYMHIPSEAPEVIEGNRPPVNWPVAGRVEIDELQIRYRPDAPLVLRGITCTFEGGHRIGIVGRTGSGKSTLIGALFRLVEPAGGKIIVDGIDICSIGLHDLRSRFGIIPQDPTLFNGTVRYNMDPLSQHSDQEIWEVLGKCQLQEAVQEKEGGLDSSVVEDGANWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLAISDGKLVEYDEPMNLMKREGSLFGKLVKEYWSHFQSAESH 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi524g00025 1200 Pfam ABC transporter 403 537 IPR003439 GO:0005524
Sebi524g00025 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 608 IPR027417 -
Sebi524g00025 1200 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 954 1188 IPR003439 GO:0005524
Sebi524g00025 1200 Pfam ABC transporter 971 1119 IPR003439 GO:0005524
Sebi524g00025 1200 SMART AAA_5 980 1172 IPR003593 GO:0016887
Sebi524g00025 1200 SMART AAA_5 412 585 IPR003593 GO:0016887
Sebi524g00025 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 944 1181 IPR027417 -
Sebi524g00025 1200 Gene3D - 938 1189 IPR027417 -
Sebi524g00025 1200 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 711 917 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi524g00025 1200 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 705 - -
Sebi524g00025 1200 FunFam ABC transporter C family member 5 709 935 - -
Sebi524g00025 1200 ProSitePatterns ABC transporters family signature. 510 524 IPR017871 GO:0005524|GO:0016887
Sebi524g00025 1200 CDD ABCC_MRP_domain2 952 1172 - -
Sebi524g00025 1200 CDD ABC_6TM_ABCC_D1 96 358 IPR044746 GO:0140359
Sebi524g00025 1200 Pfam ABC transporter transmembrane region 673 880 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi524g00025 1200 Pfam ABC transporter transmembrane region 70 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi524g00025 1200 CDD ABCC_MRP_domain1 385 585 - -
Sebi524g00025 1200 CDD ABC_6TM_ABCC_D2 679 929 IPR044726 GO:0140359
Sebi524g00025 1200 FunFam ABC transporter C family member 10 53 366 - -
Sebi524g00025 1200 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 387 608 IPR003439 GO:0005524
Sebi524g00025 1200 SUPERFAMILY ABC transporter transmembrane region 694 934 IPR036640 GO:0005524|GO:0016020
Sebi524g00025 1200 FunFam ABC transporter C family member 3 937 1189 - -
Sebi524g00025 1200 Gene3D ABC transporter type 1, transmembrane domain 41 367 IPR036640 GO:0005524|GO:0016020
Sebi524g00025 1200 Gene3D ABC transporter type 1, transmembrane domain 646 935 IPR036640 GO:0005524|GO:0016020
Sebi524g00025 1200 FunFam ABC transporter C family member 10 368 621 - -
Sebi524g00025 1200 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 70 350 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi524g00025 1200 Gene3D - 380 614 IPR027417 -
Sebi524g00025 1200 SUPERFAMILY ABC transporter transmembrane region 58 363 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi524g00025 Sebi-Chr524 578819 585265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi524g00025 379 600 Calmodulin-binding Proteins AT2G36910 29.707 8.70e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi524g00025 K05666 - gmx:100811468 2134.38