Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi524g00024 ATGGGAAGAGCTTTCTACGTATACCCAGTTCGCTTTCTTGATCCTGTGACAAACTCCACTGCTTCTTTCTCTTGCCGTTTCTCTTTCTCAATCTTTCCCTCACCTTCTTGCCCTTCTGGCGATGGCATTGCTTTTCTCATAGCCTCAAGCACCGATTTTTCAAGCCTCTCTCGTGGATATATGGGTCTTCCTGCACCTCTCCTTTTCAACCAACAAGATTCCTACTTTGCAGTGGAATTTGACACCAGTTTTGACCCTTCTCTTGGTGACATTAATGGGAATCACATTGGAATTGATGTCAATAGTGTCGTATCTTTGGCTTCTGTGGATGTTCTTTCTCGTGGAATTGACTTGAAAAGTGGGAAATTGATCACTGCTTGGATTGAGTACAGAGATTCCATGAAAATGGTTCGTGTGTGGGTTGGTTACTCTTCAACTAGGCCTCCAACTCCAATTCTTGTTTCCCAGATAGACCTTTCTGAGAAACTCAAGGAGTTCATGCATGTGGGGTTCTCTGCCTCTAATGGACAGGGCTCAGGGGATTCAATCACATCCACCAAACACAATGGTGCAAATAACAGAAGGAAAAAGATTGAGGAGTTGGCTCTTGGATTGGGAGGGATAACAGCTTTTGTAGTGTCAGCATTGGCAGCAGTTTTTATGATCTGTGTTTTCTTGACAAGGAAAAAGGGTGTTGTTAGACAGAAAAAGGAAGGTCAAAGTTGTAGATTTCAGACAAATAAAGTGCCTATGAGATTGACACTTTCAGAGATCAAAGTGGCTACAATGGGGTTTAATAGAGATAGACTTGTTGGGGAAGGTGCATCAGCTAAGGTTTATAAAGGGTCTCTTCCATTTGGTGGTGATGTGGCAGTGAAAAGATTTGAGAGAGCTGATGATTTTGATTGTCTGCACAATCCATTTGCCACTGAGTTTGCAACAATGGTGGGTTATTTGAAGCACAAAAACTTGGTTCAGCTTAAGGGATGGTGTTGTGAGGGGAATGAGTTGGTACTGGTTTATGAGTACCTACCCAATGGGAGCTTGGATAAAGTTCTGCATAGAAACTTCAATTCTTCAATTGTTCTTTCATGGAAGCAAAGAGTTAATATAGTTCTAGGGGTTGCTTCTGCTCTTACCTATCTTCATGAAGAATGTGAGAGGCAGATCATTCATAGAGATGTTAAGACTTGCAATATAATGCTTGATGCAGATTTCAATGCCAAGCTTGGGGATTTTGGACTTGCAGAAGTGTATGAACATAGTTCTATCACAAGGGATGCTACTATACCAGCAGGGACAATGGGTTATCTTGCTCCTGAATATGTGTATACTGGTGTTCCAACTGTAAAAACTGATGTGTATAGCTTTGGGGTAGTGATGATAGAAGTGGCAACTGGGAGGAAGCCTGTGGAAGATGATGGCACTGTGGTTGGTGATTATGTGTGGAACTTGTGGGAAAAGAACAAACTCCTTGAGGCTGCTGATCCAAGATTGATGGGGAAGTTTGATGCATTGGAGATGGAAAGGATGCTTCTGGTGGGGCTTCTTTGTGTACACCCTGATCATGAAAAGAGGCCAAGGGTGAGAGATGCAGCTAGAATGATTAAGAAAGAAGCAACACTTCCAATGTTGCCTCCAAGTAAACCAAGGGTGAGAATTAGGCCTATTTGTCCAAATGATACACCAGAAACACAAACTGTGGTTGGGGATTGGCTCAGTTCAGAGGAGGCTCCATATTTGACTCCTAGGAGCCAGTTTTATCAGGACTTGTAA 1776 0.4262 MGRAFYVYPVRFLDPVTNSTASFSCRFSFSIFPSPSCPSGDGIAFLIASSTDFSSLSRGYMGLPAPLLFNQQDSYFAVEFDTSFDPSLGDINGNHIGIDVNSVVSLASVDVLSRGIDLKSGKLITAWIEYRDSMKMVRVWVGYSSTRPPTPILVSQIDLSEKLKEFMHVGFSASNGQGSGDSITSTKHNGANNRRKKIEELALGLGGITAFVVSALAAVFMICVFLTRKKGVVRQKKEGQSCRFQTNKVPMRLTLSEIKVATMGFNRDRLVGEGASAKVYKGSLPFGGDVAVKRFERADDFDCLHNPFATEFATMVGYLKHKNLVQLKGWCCEGNELVLVYEYLPNGSLDKVLHRNFNSSIVLSWKQRVNIVLGVASALTYLHEECERQIIHRDVKTCNIMLDADFNAKLGDFGLAEVYEHSSITRDATIPAGTMGYLAPEYVYTGVPTVKTDVYSFGVVMIEVATGRKPVEDDGTVVGDYVWNLWEKNKLLEAADPRLMGKFDALEMERMLLVGLLCVHPDHEKRPRVRDAARMIKKEATLPMLPPSKPRVRIRPICPNDTPETQTVVGDWLSSEEAPYLTPRSQFYQDL 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi524g00024 591 Pfam Protein kinase domain 266 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi524g00024 591 PANTHER - 2 547 - -
Sebi524g00024 591 ProSitePatterns Protein kinases ATP-binding region signature. 271 293 IPR017441 GO:0005524
Sebi524g00024 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 390 402 IPR008271 GO:0004672|GO:0006468
Sebi524g00024 591 FunFam L-type lectin-domain containing receptor kinase VIII.1 344 554 - -
Sebi524g00024 591 Gene3D - 1 202 - -
Sebi524g00024 591 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Sebi524g00024 591 SMART serkin_6 265 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi524g00024 591 SUPERFAMILY Protein kinase-like (PK-like) 249 553 IPR011009 -
Sebi524g00024 591 SUPERFAMILY Concanavalin A-like lectins/glucanases 1 176 IPR013320 -
Sebi524g00024 591 CDD lectin_legume_LecRK_Arcelin_ConA 1 177 IPR001220 GO:0030246
Sebi524g00024 591 ProSiteProfiles Protein kinase domain profile. 265 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi524g00024 591 Pfam Legume lectin domain 1 186 IPR001220 GO:0030246
Sebi524g00024 591 Gene3D Transferase(Phosphotransferase) domain 1 344 542 - -
Sebi524g00024 591 Gene3D Phosphorylase Kinase; domain 1 226 343 - -
Sebi524g00024 591 FunFam L-type lectin-domain containing receptor kinase S.6 229 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi524g00024 Sebi-Chr524 549289 551169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi524g00024 1 587 Receptor kinase-like Gene Family AT5G42120 56.032 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Sebi524g00024 Pkinase 4.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi524g00024 - - gmx:100783805 901.738