Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi524g00022 ATGGCAGATCTTGTTAGCTACAGGAATGCCGACCGTGACATTGAGCAGGCATTGATTGCTTTGAAAAAGGGTGCTCAGCTGCTTAAATATGGTCGTAAGGGAAAACCTAAGTTTTGTTCGTTTAGACTTTCCAATGATGAGTTGTCTTTAATCTGGATTTCAAGTAGTGGAGAAAGAAGTTTGAAGCTATCTTCTGTCTCAAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGATATCTGCGTCCTGAGAAGGACTATTTGTCTTTTTCACTTATTTATAACCACGGGAAGCGATCTCTTGACTTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGTCTCAAGGCATTGATATCTTCTGGTCAAGGTGGGCGGTCAAAAATTGATGGATGGAGTGATGGAGGCCTATATCTTGATGATAGTAGAGACTTGACATCAAGTAGTCCTAGTGAAAGTTCAGTTCGTGTTTCACAGGACATCAGTTCTCCTGACATTTCTGTTAGTGTGCCAAATACTTCTCCAAAGTCCTTTCAGCCTGAGAATACCTTAAATTTTGAACGGTCACATGCTCCATCAAACCCATCAAATATGCAAGTGAAAGGATCTGGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCCCCCAGCACATCCAGTCATGGGTCTGCACCGGATGATTATGATGCTCTTGGTGATGTGTACATTTGGGGGGAGGTCATCTGTGAGAATGTTGTGAAAGTTGGTGCTGAGAAAAATGTCAGTTATCTCAGCCCAAGGGCAGATATTCTCCTCCCCAGGCCACTGGAGTCCAATGTGGTCTTAGATGTACTTCAAATAGCATGCGGTGTAAAACATGCTGCTCTAGTTACAAGGCAAGGTGAAATTTTTACATGGGGTGAAGAATCTGGTGGCCGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAGGCACTGGCTTCTACAACCGTTGATTTTGTTGCCTGTGGGGAGTTTCATACATGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGTACAGATGTTAGTCACTGGATACCAAAGCGAATTGCAGGTCCACTAGAGGGGCTTCAAGTCGCTTTAGTCACCTGTGGTCCATGGCACACAGCTTTGATAACTTCAACTGGGCAGCTCTTTACATTTGGTGATGGAACATTTGGTGTCCTAGGCCATGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTAGAATCCTTGTCTGGGTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTCGTAGAGGTTATTGTAACACAATCCAGTGCAAGTGTGTCATCAGGTAAATTGTTTACTTGGGGCGATGGAGATAAAAATCGCCTTGGACATGGAGACAAAGAGGCCCGGCTCGAACCAACTTGCGTACCTTCACTTATTGATTACAATTTTCATAGAATTGCTTGCGGGCACAGTTTGACAGTAGGCCTGACAACGTCTGGACATGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGAAATCCCCAGTCTGACGGAAAGGTGCCCTGTTTGGTTGAAGACAAGCTTGCTGGAGAATCTGTTGAAGAAATTGCATGTGGAGCTTATCATGTTGCTGTTTTAACATCCAAAAATGAAGTTTATACGTGGGGGAAGGGTGCAAATGGGCGATTGGGTCATGGAGATGTTGAAGATAGGAAAACACCTACTTTGGTTGAAGCCTTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGCAATCTGGTGCTGAGCAGTCTCAATGCTCTGCTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAACTGTTATAATTGTGGACTTGTGCATTGTCATTCATGCAGTTCAAGGAAAGCATTGAGAGCAGCTCTGGCCCCAAATCCTGGGAAGCCATATCGTGTTTGTGATTCTTGTTTTGCAAAATTGAATAAGGTTACAGAATCTGGCAATAATAATCGGAGGAATGCTATGCCTCGTTTGTCTGGTGAAAACAAGGACAGATTAGAAAAGTCTGAGCTAAGATTGTCGAAGTCAGCAGTGCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAACAGGGGAAGAAGGCTGATACATTCTCTCTGGTTCGCGCCTCACAAGCGCCGTCTTTGCTACAGCTGAAAGATGTTGTCTTGTCTACTGCTATTGATCTGAAACGCACAGTTCCTAGACCTGTTCTTACACAATCTGGAGTGAGTTCCAGGTCTGTGTCCCCTTTCTCTAGAAGACCGAGTCCCCCTCGTTCTGCTACACCTATTCCAACAACATCAGGACTTTCCTTCTCAAAAAGTATTGCTGATAGTTTGAAGAAAACAAATGAACTATTGAACCAAGAAGTGCTGAAGTTACGTGCTCAGGTTGAGACCCTGAGACAGAGATGTGAACTGCAAGAATTAGAGCTTCAAAGGTCAGCAAAAAAGACTCAGGAAGCTATGGCACTGGCTGCTGAGGAATCTACCAAATCTAAGGCTGCAAAAGAAGTTATTAAGTCACTTACAGCACAGCTCAAAGATCTAGCTGAGAGGCTTCCTCCTGGTGTTTATGATGCTGAGAACATCAGACCAGTGTACCTGCCAAATGGTCTGGAGTCAAATGGCATCCACTATCCAGACTTAAACGGGGAGCGTCACACCAGGGCTGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATAGGACTTGAATCTTCTCTGATGAATAGAACAGAGGGGAATTTCCCTGGAAGCTATGGAACTAGTCTTTACCAGCAGAGCCGGGGGCTTGTCGCCTCTAATGGGACAGATGATTACCCAGATGCTAAATTGCCAAATGGAAGTGGTGTGATTCAGGCAAGCAGCAACAGTGTGTCAGATACTGTTGAGGGTAGGGATTCTGGGCATTTCCAAGATGATGAGAGTGATATGAGATCGAGGAATGCTGCATTGCCTGCTAATAGTAATCAAATTGAAGCAGAATGGATCGAACAGTACGAACCTGGTGTCTATATAACACTTGTTGCCCTGCGAGATGGAACGAGAGATCTAAAGAGAGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCACCAAGCAGAGACATGGTGGTCAGAGAACCGCGAGAAGGTATATGAAAGGTACAATGTTCGGAGCACAGACAAGTCTTCAAACCAAGCAGCACGTAGGGCAGAGGGTGCTGGTTCACCTGTTCTATAA 3360 0.447 MADLVSYRNADRDIEQALIALKKGAQLLKYGRKGKPKFCSFRLSNDELSLIWISSSGERSLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNHGKRSLDLICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLYLDDSRDLTSSSPSESSVRVSQDISSPDISVSVPNTSPKSFQPENTLNFERSHAPSNPSNMQVKGSGSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENVVKVGAEKNVSYLSPRADILLPRPLESNVVLDVLQIACGVKHAALVTRQGEIFTWGEESGGRLGHGVGKNVVQPRLVEALASTTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLEPTCVPSLIDYNFHRIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPQSDGKVPCLVEDKLAGESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWQSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFAKLNKVTESGNNNRRNAMPRLSGENKDRLEKSELRLSKSAVPSNMDLIKQLDSKAAKQGKKADTFSLVRASQAPSLLQLKDVVLSTAIDLKRTVPRPVLTQSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVLKLRAQVETLRQRCELQELELQRSAKKTQEAMALAAEESTKSKAAKEVIKSLTAQLKDLAERLPPGVYDAENIRPVYLPNGLESNGIHYPDLNGERHTRAESISGSSLASIGLESSLMNRTEGNFPGSYGTSLYQQSRGLVASNGTDDYPDAKLPNGSGVIQASSNSVSDTVEGRDSGHFQDDESDMRSRNAALPANSNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRSTDKSSNQAARRAEGAGSPVL 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi524g00022 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 284 294 IPR000408 -
Sebi524g00022 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 468 519 IPR000408 -
Sebi524g00022 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 443 453 IPR000408 -
Sebi524g00022 1119 MobiDBLite consensus disorder prediction 1013 1027 - -
Sebi524g00022 1119 Gene3D - 13 129 IPR011993 -
Sebi524g00022 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 572 623 IPR000408 -
Sebi524g00022 1119 MobiDBLite consensus disorder prediction 785 815 - -
Sebi524g00022 1119 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Sebi524g00022 1119 PRINTS Chromosome condensation regulator RCC1 signature 391 407 IPR000408 -
Sebi524g00022 1119 PRINTS Chromosome condensation regulator RCC1 signature 509 527 IPR000408 -
Sebi524g00022 1119 PRINTS Chromosome condensation regulator RCC1 signature 281 294 IPR000408 -
Sebi524g00022 1119 PRINTS Chromosome condensation regulator RCC1 signature 567 588 IPR000408 -
Sebi524g00022 1119 PRINTS Chromosome condensation regulator RCC1 signature 300 316 IPR000408 -
Sebi524g00022 1119 PRINTS Chromosome condensation regulator RCC1 signature 350 366 IPR000408 -
Sebi524g00022 1119 PRINTS Chromosome condensation regulator RCC1 signature 407 421 IPR000408 -
Sebi524g00022 1119 SUPERFAMILY FYVE/PHD zinc finger 624 698 IPR011011 -
Sebi524g00022 1119 Coils Coil 824 865 - -
Sebi524g00022 1119 SMART fyve_4 622 691 IPR000306 GO:0046872
Sebi524g00022 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 405 456 IPR000408 -
Sebi524g00022 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Sebi524g00022 1119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 701 IPR013083 -
Sebi524g00022 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 404 IPR000408 -
Sebi524g00022 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 520 571 IPR000408 -
Sebi524g00022 1119 SUPERFAMILY PH domain-like 13 123 - -
Sebi524g00022 1119 MobiDBLite consensus disorder prediction 979 1028 - -
Sebi524g00022 1119 CDD PH_PLC_plant-like 12 124 - -
Sebi524g00022 1119 Gene3D - 458 629 IPR009091 -
Sebi524g00022 1119 Gene3D - 186 457 IPR009091 -
Sebi524g00022 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 349 IPR000408 -
Sebi524g00022 1119 Coils Coil 880 900 - -
Sebi524g00022 1119 FunFam PH, RCC1 and FYVE domains-containing protein 1 458 629 - -
Sebi524g00022 1119 SUPERFAMILY RCC1/BLIP-II 235 625 IPR009091 -
Sebi524g00022 1119 FunFam PH, RCC1 and FYVE domains-containing protein 1 207 457 - -
Sebi524g00022 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 298 346 IPR000408 -
Sebi524g00022 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 405 453 IPR000408 -
Sebi524g00022 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 467 514 IPR000408 -
Sebi524g00022 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 350 401 IPR000408 -
Sebi524g00022 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 519 568 IPR000408 -
Sebi524g00022 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 573 620 IPR000408 -
Sebi524g00022 1119 ProSiteProfiles BRX domain profile. 1041 1096 IPR013591 -
Sebi524g00022 1119 MobiDBLite consensus disorder prediction 996 1012 - -
Sebi524g00022 1119 Pfam FYVE zinc finger 624 690 IPR000306 GO:0046872
Sebi524g00022 1119 MobiDBLite consensus disorder prediction 147 207 - -
Sebi524g00022 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 297 IPR000408 -
Sebi524g00022 1119 Pfam Transcription factor BRX N-terminal domain 875 910 IPR027988 -
Sebi524g00022 1119 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 895 - -
Sebi524g00022 1119 MobiDBLite consensus disorder prediction 696 715 - -
Sebi524g00022 1119 FunFam Putative E3 ubiquitin-protein ligase HERC1 630 698 - -
Sebi524g00022 1119 MobiDBLite consensus disorder prediction 1098 1119 - -
Sebi524g00022 1119 Pfam Transcription factor regulating root and shoot growth via Pin3 1040 1095 IPR013591 -
Sebi524g00022 1119 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 628 690 IPR017455 -
Sebi524g00022 1119 MobiDBLite consensus disorder prediction 785 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi524g00022 Sebi-Chr524 516045 524131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi524g00022 1042 1112 Major Intrinsic Protein MIP AT1G31880 46.479 1.34e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi524g00022 - - gmx:100783270 1979.91