Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi524g00019 ATGTTGCATGAACATTCAAGTGTCCCAGTTCATGAAATAATATTTTCCACTGTTGACAAGCCCAAGCTTTTAAGCCAGCTGTCCGCATTGCTGTCTGATATTGGGCTCAACATCCGTGAAGCACATGTTTTTTCCACAACTGATGGCTTCTCCCTTGACGTCTTTGTGGTGGATGGATGGCCTGTAGAGGAAACAGATGGTTTGTATGATGCTATGGAAAAAGCTGTAGCAAGAAGTGAGGGGTCATGGTCTCGTTCTTCAAATTCTCATTCAGCTGTGGAGAAAGCCTTAGCAGCAGAAGGAAAATCTGGAGATTGGGAAATAGACAGGAGGTTGTTAAAGATTGGAGAAAGAATAGCATCTGGATCCTGTGGAGATTTGTATCGTGGAGTTTATCTTGGTGAAGATGTTGCTGTTAAGGTTCTAAGATCTGAGCAACTGAATGATGCCTTAGAGGATGAGTTTGCTCAAGAAGTCGCTATTCTGAGGCAGGTGCATCATAAAAATGTTGTCCGTTTCATTGGCGCTTGTACAAAGTGTCCACATTTGTGCATAGTAACAGAGTATATGCCTGGAGGAAGTTTATATGATTACTTGCACAAAAATCATAATGTCTTGGAGCTGTCTCAATTACTAAAGTTTGCAATTGATGTCTGCAAGGGCATGGAGTATTTGCATGGAAACAACATAATTCACAGGGATCTGAAGACGGCCAACTTGCTAATGGATACGCACAGTGTTGTTAAAGTGGCAGATTTTGGAGTTGCTCGGTTCCTAAATCAGGGGGGAGTGATGACAGCGGAAACTGGAACATATAGATGGATGGCACCAGAGGTTATAAACCATCAGCCCTATAATCAAAAAGCAGATGTATTCAGTTTTTCCATAGTATTATGGGAACTAGTGACAGCAAAGGTACCATATGATACCATGACTCCTCTACAAGCTGCCTTGGGTGTAAGACAGGGACTGCGTCCAGAACTTCCAAAGCATGGGCACCCTAAACTATTAGATTTGATGCAAAGATGTTGGGAAGCAATTCCAAGCAACCGTCCATCCTTTAATGAGATAAGAGTTGAACTTGAAAATCTTTTGCAAGAAATGGAGAGTGATTCAGAAGCTAATGGTGTTTGA 1134 0.4198 MLHEHSSVPVHEIIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGFSLDVFVVDGWPVEETDGLYDAMEKAVARSEGSWSRSSNSHSAVEKALAAEGKSGDWEIDRRLLKIGERIASGSCGDLYRGVYLGEDVAVKVLRSEQLNDALEDEFAQEVAILRQVHHKNVVRFIGACTKCPHLCIVTEYMPGGSLYDYLHKNHNVLELSQLLKFAIDVCKGMEYLHGNNIIHRDLKTANLLMDTHSVVKVADFGVARFLNQGGVMTAETGTYRWMAPEVINHQPYNQKADVFSFSIVLWELVTAKVPYDTMTPLQAALGVRQGLRPELPKHGHPKLLDLMQRCWEAIPSNRPSFNEIRVELENLLQEMESDSEANGV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi524g00019 377 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 95 369 - -
Sebi524g00019 377 SUPERFAMILY Protein kinase-like (PK-like) 102 366 IPR011009 -
Sebi524g00019 377 Gene3D Transferase(Phosphotransferase) domain 1 191 376 - -
Sebi524g00019 377 Pfam Protein tyrosine and serine/threonine kinase 113 360 IPR001245 GO:0004672|GO:0006468
Sebi524g00019 377 FunFam Serine/threonine-protein kinase isoform 1 103 191 - -
Sebi524g00019 377 ProSiteProfiles ACT domain profile. 12 86 IPR002912 -
Sebi524g00019 377 SUPERFAMILY ACT-like 11 79 IPR045865 -
Sebi524g00019 377 Coils Coil 354 374 - -
Sebi524g00019 377 SMART serkin_6 113 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi524g00019 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Sebi524g00019 377 Gene3D Phosphorylase Kinase; domain 1 102 190 - -
Sebi524g00019 377 ProSiteProfiles Protein kinase domain profile. 113 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi524g00019 377 PRINTS Tyrosine kinase catalytic domain signature 270 280 IPR001245 GO:0004672|GO:0006468
Sebi524g00019 377 PRINTS Tyrosine kinase catalytic domain signature 289 311 IPR001245 GO:0004672|GO:0006468
Sebi524g00019 377 PRINTS Tyrosine kinase catalytic domain signature 187 200 IPR001245 GO:0004672|GO:0006468
Sebi524g00019 377 PRINTS Tyrosine kinase catalytic domain signature 332 354 IPR001245 GO:0004672|GO:0006468
Sebi524g00019 377 PRINTS Tyrosine kinase catalytic domain signature 224 242 IPR001245 GO:0004672|GO:0006468
Sebi524g00019 377 CDD STKc_MAP3K-like 119 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi524g00019 Sebi-Chr524 443668 454962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi524g00019 6 371 MAP Kinase Kinase Kinase AT4G35780 56.464 2.12e-156 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Sebi524g00019 PK_Tyr_Ser-Thr 7.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi524g00019 - - gmx:100797987 713.761