Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi524g00009 ATGATGAGTACTCTGTCGGAACCGAGCTCTCGGAGGAGCCTCCCCCTGCACCGGAAGAGAAGCCTGCTGGGAAGAAGAAAGGTAAAAAAGGTTGTGTTTGCTGGGAAAAAGAAGGGGAAATCGAAGAAGGGTGGTGCGTTCACTGGGTCTAGCTTTGGTTTGCTTGGTGATGGTGACGATGATGAAGAGAAATCGGGGTTAACCGGTGAACGAGATGACGAGGATGAGGATGAACCGGTGGCTAGTTTTTCAGGTAAGAAAAAGAAGTCATCGAAGTCTTCAAAGAAGGCAGCTTTTCCCGATGAGGATAGTGTTTCTGTACCTGAGTCTGCTAAAGGTGGTGATGGCAAGGATGAGGATGACGATTCTATAGTTGCGTTTTCAGAAAATGAAACCGTAGAAGTTAAAGCTGAGACAATTGAATCAAAGAAGAATGAGTCAAAGACTAAAGCAGCTGACAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCACTGGCTAGAAGAAAAGAGGCTGAAGAAAGGAAGAAAAGAGAAGAGGAGGAGAAGTTAAGGAAGGAAGAAGAGGAGCGACGTAGGCAAGAGGAACTTGAGAGACAGGCAGAAGAGGCTAGACGCAGAAAGAAGGAAAGAGAAAAGGAGAAACTCCAGAAAAAGAAGCAAGAAGGTAAACTGTTAACTGGTAAGCAGAAAGAAGAAGCCCGCCGGTTGGAGGCAATGAGGAGGCAGATTCTCAATAACACAGGGGGTGTGACTCTTCCTACTGGGGACACTGGTGCTCCAGCCAAAAAACCCATATATCAAACAAAGAAGTTAAAACCAAACAATCGTAATCAGAATGGTGCTCCTGCTGTTCAGACAGCTGAAACTATTGAAGTAAAGGAGACTACCACTGATGTGAGTTCAGAGGAAACAAAAAAGGTTGAAGAAGTGGAGACCATGCATATGGAGGACAAAGTTAAACCTCCTGAAGCTGTTGAAGAGGATGGAGTGGAAGAAGATGATGACGAGGATGAATGGGATGCAAAAAGCTGGGATGATGTTAATCTAAATGCTAAAGGCGCATTTGCTGATGAAGAGGCTGACTCAGAGCCTGAACCAATTGTCAAAAAGGAGATTAAAAGTACAGTACCTGCTAACAATGCTGGTGCTACTAATAAAATTGTTTCTAACCCGGTGGCTGAAAAAATTGAAGATAGACAGCAGGCTGTAGACAAAAGTAGAAAGCAAGATTCAGGTTCGAAAAGAGAACCACAAAAGTCTGCGGGGCCTTCTAAGCCGAGTGATGAGAACCTTCGCTCCCCAATTTGCTGTATTATGGGACATGTGGACACTGGTAAAACCAAGCTGCTGGATTGTATTCGAGGTACTAATGTTCAAGAGGGTGAGGCTGGTGGAATCACACAACAGATTGGTGCAACATACTTTCCCGCGGAGAACATACGTGATAGAACAAAGGAGCTGAAAGCTGATGCAAAGCTGAAAGTTCCTGGTCTACTGGTTATTGATACCCCAGGGCACGAATCATTCACTAACTTAAGGTCTCGGGGTTCAGGTCTATGTGATATTGCCATTTTGGTTGTTGACATTATGCATGGCTTAGAGCCACAAACAATAGAATCACTCAATCTATTAAAAATGAGAAACACAGAATTCATTGTTGCCCTGAATAAGGTTGACAGGCTTTATGGGTGGAAATCATGTCGCAATGCTCCAATTGTTAAAGCAATGAAGCAGCAGTCTAAGGATGTTCAAAATGAGTTTAATATGAGGCTCATTCAGATTATTACACAATTCAAGGAACAGGGTCTAAATACTGAGTTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATCCCAGATTTGTTATTACTATTGGTTCAGTGGACCCAAAAAACAATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAGTGTACTGTTTTGGAGGTCAAGGTTGTTGAAGGACATGGAACTACTATTGATGTTGTTTTAGTCAATGGCATTCTTCATGAAGGAGAACAAATAGTTGGTCCAATTGTTACCACGATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTGCGTGTTAAGGGGACATATCTCCATCACAAAGAAATCAAAGCTGCAATGGGTATAAAGATCACAGCTCAGGGGCTTGAACATGCTATTGCTGGCACTGGTTTATATGTGGTGAAGCCTGATGATGATTTGGAAGATGTTAAAGAAGTTGCTATGGAAGATATGCGGTCAGTCATGAGCAGGATTGACAGGAGCGGTGAGGGTGTTTGTGTACAAGCATCCACCCTTGGCTCATTGGAAGCATTACTGGAGTTTTTGAAAACTCCGGAAGTGAATATTCCTGTTAGTGGTATAAGCATAGGCCCTGTACATAAAAAGGATGTAATGAAGGCCAGTGTAATGCTTGAAAAGAAACGAGAGTATGCTACTATATTGGCTTTTGATGTCAAAGTCACTCCTGAGGCTAGGGAACTTGCAGATGAATTGGGTGTGAAAATTTTTATTGCTGATATCATTTATCATCTGTTTGATCAATTTAAAGCTTATATTGACAACATTAAGGAAGAGAAAAAGAGAGAAGCTGCTGATGAGGCAGTCTTCCCATGTGTTCTGAAAATCTTACCGAATTGCGTCTTCAACAAGAAGGATCCAATTGTTTTGGGAGTTGATGTCCTTGAAGGCATTGCAAAGGTTGGTACTCCAATTTGTATTCCTTCCAGAGAGTTCATTGATATTGGTCGCATTGCCTCTGTTGAGAATAACCATAAACCTGTTGATTATGCAAAGAAGGGGCAGAAAGTCGCCATTAAGATTGTTGGCAGCAATCCTGAGGAGCAACAAAAAATGTTTGGGCGGCATTTTGAGATTGATGATGAACTCGTAAGCCATATTTCACGGAGATCTATCGATATACTCAAAGCTAATTATCGGGGGGCGTTGTATGACGTGGAGAGGCAAAGTGACTCGTACAAGAAACTCCTATGCTCCGTCAGCAGGGAAGCTCAAGCCAGAAGAGTAAAAAGGAAAACTGCCAAGCATATTCGACACTTCGAGATCCATAACCCTTACCTCTGA 3141 0.425 MMSTLSEPSSRRSLPLHRKRSLLGRRKVKKVVFAGKKKGKSKKGGAFTGSSFGLLGDGDDDEEKSGLTGERDDEDEDEPVASFSGKKKKSSKSSKKAAFPDEDSVSVPESAKGGDGKDEDDDSIVAFSENETVEVKAETIESKKNESKTKAADKKVPKHVREMQEALARRKEAEERKKREEEEKLRKEEEERRRQEELERQAEEARRRKKEREKEKLQKKKQEGKLLTGKQKEEARRLEAMRRQILNNTGGVTLPTGDTGAPAKKPIYQTKKLKPNNRNQNGAPAVQTAETIEVKETTTDVSSEETKKVEEVETMHMEDKVKPPEAVEEDGVEEDDDEDEWDAKSWDDVNLNAKGAFADEEADSEPEPIVKKEIKSTVPANNAGATNKIVSNPVAEKIEDRQQAVDKSRKQDSGSKREPQKSAGPSKPSDENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRDRTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKSCRNAPIVKAMKQQSKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTYSEEVQCTVLEVKVVEGHGTTIDVVLVNGILHEGEQIVGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDVKEVAMEDMRSVMSRIDRSGEGVCVQASTLGSLEALLEFLKTPEVNIPVSGISIGPVHKKDVMKASVMLEKKREYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNIKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVLEGIAKVGTPICIPSREFIDIGRIASVENNHKPVDYAKKGQKVAIKIVGSNPEEQQKMFGRHFEIDDELVSHISRRSIDILKANYRGALYDVERQSDSYKKLLCSVSREAQARRVKRKTAKHIRHFEIHNPYL 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi524g00009 1046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 719 IPR027417 -
Sebi524g00009 1046 MobiDBLite consensus disorder prediction 383 434 - -
Sebi524g00009 1046 MobiDBLite consensus disorder prediction 1 369 - -
Sebi524g00009 1046 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 753 882 IPR036925 -
Sebi524g00009 1046 CDD IF2_eIF5B 436 646 - -
Sebi524g00009 1046 FunFam Eukaryotic translation initiation factor 5B 770 876 - -
Sebi524g00009 1046 CDD IF2_aeIF5B_IV 891 986 - -
Sebi524g00009 1046 FunFam Eukaryotic translation initiation factor 5B 883 1016 - -
Sebi524g00009 1046 Gene3D Translation factors 656 771 - -
Sebi524g00009 1046 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 433 649 IPR000795 GO:0003924|GO:0005525
Sebi524g00009 1046 FunFam Eukaryotic translation initiation factor 5B 427 655 - -
Sebi524g00009 1046 SUPERFAMILY Translation proteins 887 1001 IPR009000 -
Sebi524g00009 1046 MobiDBLite consensus disorder prediction 134 241 - -
Sebi524g00009 1046 MobiDBLite consensus disorder prediction 272 296 - -
Sebi524g00009 1046 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 87 1005 IPR015760 -
Sebi524g00009 1046 FunFam eukaryotic translation initiation factor 5B 656 770 - -
Sebi524g00009 1046 Coils Coil 156 227 - -
Sebi524g00009 1046 Pfam Translation-initiation factor 2 755 869 IPR023115 -
Sebi524g00009 1046 MobiDBLite consensus disorder prediction 297 327 - -
Sebi524g00009 1046 CDD aeIF5B_II 657 762 - -
Sebi524g00009 1046 MobiDBLite consensus disorder prediction 399 417 - -
Sebi524g00009 1046 MobiDBLite consensus disorder prediction 328 344 - -
Sebi524g00009 1046 Pfam Elongation factor Tu GTP binding domain 437 645 IPR000795 GO:0003924|GO:0005525
Sebi524g00009 1046 PRINTS GTP-binding elongation factor signature 517 528 IPR000795 GO:0003924|GO:0005525
Sebi524g00009 1046 PRINTS GTP-binding elongation factor signature 437 450 IPR000795 GO:0003924|GO:0005525
Sebi524g00009 1046 PRINTS GTP-binding elongation factor signature 501 511 IPR000795 GO:0003924|GO:0005525
Sebi524g00009 1046 PRINTS GTP-binding elongation factor signature 553 562 IPR000795 GO:0003924|GO:0005525
Sebi524g00009 1046 MobiDBLite consensus disorder prediction 15 43 - -
Sebi524g00009 1046 NCBIfam small GTP-binding protein domain 438 562 IPR005225 GO:0005525
Sebi524g00009 1046 Gene3D - 427 655 IPR027417 -
Sebi524g00009 1046 Gene3D - 772 876 IPR036925 -
Sebi524g00009 1046 Gene3D Translation factors 883 1016 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi524g00009 Sebi-Chr524 200539 211151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi524g00009 156 1002 Eukaryotic Initiation Factors Gene Family AT1G76810 73.288 0.0 1139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi524g00009 K03243 - gmx:100814875 1369.37