Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi523g00003 ATGGATAGTTCGCCATGGGAGGGTTTCTTCGAGTTTAATTGGACAAAACAGTTACCATACCAAAGCAAGCATCTTTGCTTCAACGAGTTCACCGACCTTGAAAATTTCACCTTCGACTTCAATCTCCCACCCCTTTATGAAGATTTTGAGGTCGACCAAAAGCCCCTCAACATTGTTGTGCCCAACCAGGGACATAGCAATAATGAGAGTGATTTTGTAACTTTTGTGAAGAAAGAGGAGAATCAAGAGGTGTCATTAGCATTGCAAGTGACTAATAGCAATAGGAAGAAGAGGTCTGATTCATTGGAATTTGATGAGATAAAGAAGCATTTTGGTGTTCCAATAACAAAAGCAGCAAAGGAAATGAATGTGGGATTAACCCTATTGAAGAGAAGGTGCAGGGAGCTCAACATTAGGAGATGGCCTCACAGAAAGCTTAAGAGCTTGAAGTTACTCATTGACAACGTTAAGGAATTGGGTTTGGCAAACGAGGTTGCTATGTTGGAGAAACACAAGATGATGTTGGAGAAACTACCGGGAATGGAACTGAATGAAGAAACCAAGAAGCTGAGACAGGCTTGTTTTAAAGCTAATTATAAACGAAGAAGATATTTGGCTTTACAAGCTTGA 630 0.4032 MDSSPWEGFFEFNWTKQLPYQSKHLCFNEFTDLENFTFDFNLPPLYEDFEVDQKPLNIVVPNQGHSNNESDFVTFVKKEENQEVSLALQVTNSNRKKRSDSLEFDEIKKHFGVPITKAAKEMNVGLTLLKRRCRELNIRRWPHRKLKSLKLLIDNVKELGLANEVAMLEKHKMMLEKLPGMELNEETKKLRQACFKANYKRRRYLALQA 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi523g00003 209 Pfam RWP-RK domain 102 149 IPR003035 -
Sebi523g00003 209 ProSiteProfiles RWP-RK domain profile. 89 170 IPR003035 -
Sebi523g00003 209 PANTHER PROTEIN RKD4 74 204 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi523g00003 Sebi-Chr523 99209 100212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi523g00003 100 206 AtRKD Transcription Factor Family AT5G53040 63.551 6.23e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Sebi523g00003 RWP-RK 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi523g00003 - - aprc:113850801 319.701