Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi522g00039 ATGAACGGCTTAAGAAGCGAAAGAGCCCCTCTCTTGGAGGCTGAGCGCGGTGGAAGGGGAAAGCGAAATGATGCCTCGGAAGGACCAGTCTCAGACCTTGAACATGGTGATGCGGTGCCGGCGGCAAATGTAGGATTTGGTCGAGTGCTTTCACTTGCAAAGCCTGAGGCTGGAAAGTTGGTGATTGGTACTGTGGCTCTGTTGATTGCAGCCACATCTAGTATCTTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCAGGGGATATCCGAACTCCCGAGGAGAAAGATGCAGCATTAGATGCTGTCAAGAACACCATACTAGAAATCTTTCTAATTGTTGTTTTTGGTTCAGTTTGCACAGCACTTCGAGCTTGGCTTTTTTATACTGCTAGTGAAAGAGTTGTTGCACGGCTGAGGAAGGATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCCTTCTTTGATGTTACTCGAACTGGGGAACTTTTAAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCAACTACCAATCTTTCTGAGGCCATGAGAAACCTTTCAACTGCATTTATTGGTCTCAGCTTCATGTTTGCAACATCATGGAAGTTAACATTGTTGGCTTTGGCTGTTGTACCTGTTATTTCTGTTGCTGTTCGTAAATTTGGCCGTTTCCTGCGTGAACTTTCTCATAAAACTCAAGCTGCAGCTGCAGTAGCATCGTCAATTGCTGAGGAATCCTTTGGTGCAATAAGAACAGTAAGATCTTTCGCCCAGGAAGATTATGAAATAACACGCTACTCTGAGAAAGTTAATGAGACACTTAAGCTTGGACTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGCCTTAATGCAGCATCTACACTTTCAGTTATTATAGTTGTTATATATGGAGCTAATTTAACAATCAAGGGTGCTATGTCCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCGGTTGGATCTTCTATATCTGGTCTCTCAGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTGTTTCAAATTATGGATCGTACCTCATCCATGCCTAAGTCGGGAAATAAATGTCCTCTGGGTGATCAAGATGGGGAAGTGGAACTAGATGGTGTATGGTTTGCCTATCCATCACGCCCAAGTCATACAGTGCTCAAGGGTATTACATTGAAACTGCATCCAGGCTCAAAGGTTGCTCTTGTTGGTCCGAGCGGTGGCGGAAAGAGTACAATCGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGAAGGATTCTGGTGAATGGGATTCCTCTGGTAGAAATATCACACAAACATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAGTTGACGCTGTTGATATAGAAAATGCAGCTAAAATGGCCAATGCACATGAATTTATATCAAAATTCCCAGAAAAATACCAGACCTTCGTTGGAGAGCGTGGGGTAAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTGCTTATGGACCCAAAAATTCTCCTCCTGGATGAAGCCACCAGTGCCCTAGATGCTGAAAGCGAATACCTAGTGCAGGATGCAATGGATTCTATCATGAAGGGAAGGACAGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACTGCTAATACTGTTGCAGTTGTTTCTGATGGCCAAGTAGTTGAGAGTGGCACCCATGATGAGCTTATCAGCAAGAATGGTGTCTATACTGCATTAGTCAGGAGACAACTACAAACAAATAAAGCCGAAATGTAG 1896 0.4288 MNGLRSERAPLLEAERGGRGKRNDASEGPVSDLEHGDAVPAANVGFGRVLSLAKPEAGKLVIGTVALLIAATSSILVQKFGGKIIDIVSGDIRTPEEKDAALDAVKNTILEIFLIVVFGSVCTALRAWLFYTASERVVARLRKDLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEAMRNLSTAFIGLSFMFATSWKLTLLALAVVPVISVAVRKFGRFLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYEITRYSEKVNETLKLGLKQAKVVGLFSGGLNAASTLSVIIVVIYGANLTIKGAMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQIMDRTSSMPKSGNKCPLGDQDGEVELDGVWFAYPSRPSHTVLKGITLKLHPGSKVALVGPSGGGKSTIANLIERFYDPTKGRILVNGIPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVDAVDIENAAKMANAHEFISKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSIMKGRTVLVIAHRLSTVKTANTVAVVSDGQVVESGTHDELISKNGVYTALVRRQLQTNKAEM 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi522g00039 631 Gene3D ABC transporter type 1, transmembrane domain 44 374 IPR036640 GO:0005524|GO:0016020
Sebi522g00039 631 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 622 IPR003439 GO:0005524
Sebi522g00039 631 CDD ABC_6TM_AtABCB27_like 63 359 - -
Sebi522g00039 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 623 IPR027417 -
Sebi522g00039 631 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Sebi522g00039 631 PIRSF ABC_prm/ATPase_B 13 631 - -
Sebi522g00039 631 Pfam ABC transporter 403 553 IPR003439 GO:0005524
Sebi522g00039 631 FunFam ABC transporter B family member 25 112 382 - -
Sebi522g00039 631 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 351 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi522g00039 631 MobiDBLite consensus disorder prediction 1 36 - -
Sebi522g00039 631 FunFam ABC transporter B family member 25 383 625 - -
Sebi522g00039 631 Pfam ABC transporter transmembrane region 60 333 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi522g00039 631 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 42 628 IPR039421 -
Sebi522g00039 631 SMART AAA_5 412 606 IPR003593 GO:0016887
Sebi522g00039 631 MobiDBLite consensus disorder prediction 9 31 - -
Sebi522g00039 631 ProSitePatterns ABC transporters family signature. 525 539 IPR017871 GO:0005524|GO:0016887
Sebi522g00039 631 Gene3D - 379 630 IPR027417 -
Sebi522g00039 631 SUPERFAMILY ABC transporter transmembrane region 48 364 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi522g00039 Sebi-Chr522 618050 623658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi522g00039 62 631 Calmodulin-binding Proteins AT2G36910 37.889 2.52e-104 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi522g00039 - - gmx:100810510 1114.37