Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi522g00035 ATGCAATCTTGGAGCTATGTTTCTGAAGAAAAGGGGTATGCCTCCAATGATGCACTCTCGCTTCCCAATACTCTTGGGAGAACTAAAAATTCATTCTTGGGTTGGGAATTGAAAACCCCATGTAGTTTTTCCAACGACATGTTAGCCTTGGGTCAGCAAAATTTTGGGAATCAAGGTTCTGAGGAATTGGGTGTTCCTGAAATGTTGGGGAAACAATTCTCTGATGATCTGATTGGGAGTGTTCCGAGCAGAAAAGATGGTGGCAGAATCACTAGTACTGTTATGGCTGCTCCATATGTGGTGGACTCTAACGGTAGGGATTCCCTCATTGATTTGAAGCTGGGACGATTTGCTGATCATGGAGATGCCATTGATCCAACATTTCCCAAAGGAGCACCAATTTTGTCTTCTTCTGAGTCAGCAACGCCCCCTAAGAGAGTTAGAGCTTCAGGGGTGCATTCACAGACTGCATACTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCACCTGTAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTCCCACAGTTATAGTGAATGGTATTGAGCAGAGATTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGCAGCTGCCGTAGACGCCTTGCAGGCCATAATGAGCGTAGAAGAAAACCACAAGTGGGTATTCACTCTGGAAAGTCCGGGAGGTTGCTTCAGCCATGTGGTGATAGCAGATTCCAGGGAGCCAAGCTAACACCAGCATCTTTTATCCGCCCGGAGATGCTCCCTAGTGGGGTCATGCATTCTGACAGATATGGAATAAGTGGCTTCTGGAGACCTATAAAAGCAGAATATGGGGCTGGCTTTAGGCATCTCTCTTCTATGCCTATTACCAATGGACATCCTCTGTCAAGATCTCCATTTCCTTCATACAGCCAAAAACAATTTCCCTTTCTTCATGAAAATGGTGCCACATCCACTACAGGAACTGGAAGCATCTTCTGTGAAAACAACAGCCAATATCCACCTGCCCTTGGGGCTCATAATTCTGGGTTACGACCACTATTCCATGACACCTTAGGAACTGAGGACTTCAATGTTTTTGATACAGCATCGACTGTTCAAGGATTGTCGGGAATTTCAGACTCATGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCAACAGGAATTCCCTTGGCTCACACCTTGGTTATCCCAAGCAGCCATAGTCATCACTATAGCATGAGTCAGGTCTCTGAAAAGATAGGAATAAACTCGCAGTCTTCTTCAAGCCGAGTGTCAGATAGGTTTCCATCAGAACTAAATTCTGCAGATGGAGGTCATCTTGGTCCTGTACTTATATCAGACAATAATGACATAGTCAACTTTGAAATGGAAGACGGGATTTTCCATGATTCAGATTTTGTGAATGTGAAAGATCGTCTTCACTGTGAAGATGGTGCAACCATAGACTTGCTCCAACTGTCATCACAGCTCCAGCGAGTTGAGCATCAGAGGCAATCCTTGCAGGTGAAGCAAGAAAATGATTCTTCTTGCACACTCCGGATTACTTAA 1599 0.4478 MQSWSYVSEEKGYASNDALSLPNTLGRTKNSFLGWELKTPCSFSNDMLALGQQNFGNQGSEELGVPEMLGKQFSDDLIGSVPSRKDGGRITSTVMAAPYVVDSNGRDSLIDLKLGRFADHGDAIDPTFPKGAPILSSSESATPPKRVRASGVHSQTAYCQVYGCNKDLSTCKDYHKRHKVCEVHSKTPTVIVNGIEQRFHLLAEFDDGKRSCRRRLAGHNERRRKPQVGIHSGKSGRLLQPCGDSRFQGAKLTPASFIRPEMLPSGVMHSDRYGISGFWRPIKAEYGAGFRHLSSMPITNGHPLSRSPFPSYSQKQFPFLHENGATSTTGTGSIFCENNSQYPPALGAHNSGLRPLFHDTLGTEDFNVFDTASTVQGLSGISDSCCALSLLSSQSQNSSSQSTGIPLAHTLVIPSSHSHHYSMSQVSEKIGINSQSSSSRVSDRFPSELNSADGGHLGPVLISDNNDIVNFEMEDGIFHDSDFVNVKDRLHCEDGATIDLLQLSSQLQRVEHQRQSLQVKQENDSSCTLRIT 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi522g00035 532 ProSiteProfiles Zinc finger SBP-type profile. 156 226 IPR004333 GO:0003677
Sebi522g00035 532 MobiDBLite consensus disorder prediction 216 235 - -
Sebi522g00035 532 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 66 518 IPR044817 GO:0003677
Sebi522g00035 532 Gene3D - 149 213 IPR036893 GO:0003677|GO:0005634
Sebi522g00035 532 Pfam SBP domain 159 225 IPR004333 GO:0003677
Sebi522g00035 532 Coils Coil 500 520 - -
Sebi522g00035 532 SUPERFAMILY SBT domain 157 230 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi522g00035 Sebi-Chr522 454383 585772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi522g00035 110 269 SBP-box Gene Family AT1G69170 52.381 9.83e-45 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sebi522g00035 SBP 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi522g00035 - - gmx:100817547 790.801