Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi522g00021 ATGGAGCTTTCTCAAGCGCATCCATGTGGAAGGGAAGGGAGGAAACCGACGCACGACTTTCTGTCACTCTACAGTAATTCAACTGCCCAACAAGATCCAAGGCCACCTTCTTCTCAAGGAAGTTGCCTCAAGACCCAAGATTTCTTACAACCACTAGATCGGGTAGAAACGAAAGCTAATGCCAAGGAAGAAGCCACAGAAGAAATATCATCGGTGGTTCAAAAGCCACCACCTTTAGCAGCACCAGCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTACAGTATTAGCCACATTTCCTATTTCAATAATAATCACAGGATTCCAAAACCAGAGACATCCCTTTTCACTGTGCATCAAACAACTAGTGCGGATAGAAATGATGACAACTCCAACTGCAGTTCATATACTTCAAGCGGTTTTACTTTGTGGGAAGAGTCTGCGATAAAAAAGGGAAAGACAGGAAAGGAGAATAATGTAGGCGAGAAACCCACGGTAGGAGCGACAGAGTCTGTGGCAAAGGGGCAGTGGACATTGACAGAGCGAACATCACAGTCGTTTTCTAACAATCGTCACAGCAGCTTCAACTCCCACTCTTCATCTCAGACAATTGGACAGAAGAACCAGAGTTTTATTGAAATGATGAAGTCTGCAAAGGATTGTACCCAGGATGAAGAGCTAGAAAACGAAGAAACCTTTTTTCTTAAGAAAGAATCCTCAAATACCCCGAGAGAAGAACTGAGGGTGAAAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACACCAAGATCAAAACATTCTGCAACAGAGCAGCGGAGAAGAAGCAAAATTAATGACAGATTCCAGATGCTACGAGAGCTTATCCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTCATTGAGTACATTCATTTTTTACAAGAGAAGGTGCATAAATATGAAGGTTCATTCCAAGGGTGGAATAACGAGCCAGAAAAATTGATTCCATGGAGAAATAATGACAGGCCAGTAGAAAATTTCCAATCTCGTGGCACAAATAGTGGGACAAGTCCATCTCCAACATTGCTGTTTGCCTCGAAGGTTGATGAGAAAAATATCACCATCTCCCCAACAATACCTGGAAGTACCCAAAATGTAGAATCTGGCTTGAGCACAGCAACTAACTTCAAGACAATGGATCATCAGTCTGGAATAATGAACAAGGCTTTTCCAATTCCTATTTCTTCCCAACCAAATTTCTTCACTCCAACTCAAATCGGTAGCCCAGGTGGAGTAGTGTCTCAGCTCACACATAGATTGGCATCTGATGCAGAGAACACCATATATCAACCTTCAGTGGATTCTCAGACTAAAACTGCTGCCAGTGAAAAGCTGAAAGAGAAAGACCTCACTATTGAAGGTGGTGCTATTAGCATATCAAGTGTGTACTCAAAAGGGTTGTTGGATACACTTACACATGCCTTGCAGAGTTCGGGGGTGGATTTGTCACAGGCTAACATTTCAGTGCAAATTGAACTTGGTAAGCAAGCAAGCATCAGACCAACGGTACCAATGTCAATGTGTAATACTAAGAATGATGGGGTTCCTTCTAACAATCAAAGGATGATGCGCTCTAGAGGTGCTGGTTCTGAGAAGTCTGATCAAGCAGTAAAGAAGCTAAAGACGTGCAGAAGTTAA 1701 0.4286 MELSQAHPCGREGRKPTHDFLSLYSNSTAQQDPRPPSSQGSCLKTQDFLQPLDRVETKANAKEEATEEISSVVQKPPPLAAPASVEHLLPGGIGTYSISHISYFNNNHRIPKPETSLFTVHQTTSADRNDDNSNCSSYTSSGFTLWEESAIKKGKTGKENNVGEKPTVGATESVAKGQWTLTERTSQSFSNNRHSSFNSHSSSQTIGQKNQSFIEMMKSAKDCTQDEELENEETFFLKKESSNTPREELRVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNNEPEKLIPWRNNDRPVENFQSRGTNSGTSPSPTLLFASKVDEKNITISPTIPGSTQNVESGLSTATNFKTMDHQSGIMNKAFPIPISSQPNFFTPTQIGSPGGVVSQLTHRLASDAENTIYQPSVDSQTKTAASEKLKEKDLTIEGGAISISSVYSKGLLDTLTHALQSSGVDLSQANISVQIELGKQASIRPTVPMSMCNTKNDGVPSNNQRMMRSRGAGSEKSDQAVKKLKTCRS 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi522g00021 566 MobiDBLite consensus disorder prediction 20 43 - -
Sebi522g00021 566 Pfam Helix-loop-helix DNA-binding domain 266 315 IPR011598 GO:0046983
Sebi522g00021 566 MobiDBLite consensus disorder prediction 155 207 - -
Sebi522g00021 566 FunFam BHLH domain class transcription factor 262 334 - -
Sebi522g00021 566 MobiDBLite consensus disorder prediction 530 566 - -
Sebi522g00021 566 Gene3D - 262 335 IPR036638 GO:0046983
Sebi522g00021 566 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 12 563 IPR044295 GO:0003700|GO:0006351|GO:0046983
Sebi522g00021 566 SMART finulus 270 320 IPR011598 GO:0046983
Sebi522g00021 566 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 314 IPR011598 GO:0046983
Sebi522g00021 566 MobiDBLite consensus disorder prediction 235 280 - -
Sebi522g00021 566 MobiDBLite consensus disorder prediction 1 43 - -
Sebi522g00021 566 MobiDBLite consensus disorder prediction 173 207 - -
Sebi522g00021 566 MobiDBLite consensus disorder prediction 530 547 - -
Sebi522g00021 566 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 334 IPR036638 GO:0046983
Sebi522g00021 566 CDD bHLH_AtBIM_like 263 339 - -
Sebi522g00021 566 MobiDBLite consensus disorder prediction 548 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi522g00021 Sebi-Chr522 231188 238250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi522g00021 1 519 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 50.185 1.54e-129 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi522g00021 HLH 4.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi522g00021 - - gmx:100808016 857.055