Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi522g00019 ATGGCAGATGTCACCTACCTCCTTCACCACCACGAACCCGACGATGACCAAACCCTAATCCCCTTACCCTTCTGGTCCCCTCATCACGATTTCGATTTCTACTCTTCCGATCCCGAATTCCCTCCCAATTTCTCCCGCGAAAATCAGGTCAATTTCCTCATGGACCTTTTCCAACAGCGCGTCGAGCAATCCCAGGTCACCACCGATCCCGTCTCCCAATCCCTAAACGACTCCGTTTTCGACGGTTTAGAATTTGGTCTCGATTTAGGGTTCGCCCCCGACGACGCCGACGATTTCTTCATCAGCACTAGGGTTTCATTACCCGGATCCGAATCCGGCGATGCTCCTTTCGACGACAACTGCGTCCGCCTCGCCGGTTTCGGATCAGACTCCGACGATGAAGACGCCAACACTGGGATCCTAGGGATCTGCATGCATTCCGACGAAGAGTATCACGAAAACGACGACGTTTCTACCATCCCTCTCTGTTGGGACTCGCTTCACTTGGAGGATAACAGGGAGAACAACAACTACGAGGACTTCGAGTGGGAGGAAGTGGACGGTCGCGTCGACGAGAGGGAGGTTCTCAGCATTTTCGATGACAGGGTAGGTGGTGATTCTGGTGAAGGCATGGAAAATTTAGAGTGGCAAGTGTTGTTGAATTCCACCACTATAGGCACAAACCCAGATTTAGAGCAAGATGCAGAGCCTTATTTTGGGGACAATGATGATTACATTTACACTGCAGAGTATGAAATGATGTTAGGTCAATTTGGTCAATTTGGGGAGAATGATAACCCCTTAATTGGTAGGCCTCCTGCTTCTGTTTCCGTTGTTCAGAACCTTCCTTCGGTGGTTGTGACCCAAGAAGACGTGGACAAAAACAATGCACTCTGTGCGGTTTGCAAAGATGAGTTTGGTGTTGGGGAAGAAGTGAAACAGTTGCCATGTTCGCATCGATACCATGGTGATTGCATTGTGCCTTGGTTGGGAATTCGGAATACTTGCCCTGTTTGTCGCTATGAGTTCCCCACAGATGATGCTGATTACGAGCGTAGGAGGGTCCAGAGATCTTCCCGGAGCATGTAA 1089 0.4995 MADVTYLLHHHEPDDDQTLIPLPFWSPHHDFDFYSSDPEFPPNFSRENQVNFLMDLFQQRVEQSQVTTDPVSQSLNDSVFDGLEFGLDLGFAPDDADDFFISTRVSLPGSESGDAPFDDNCVRLAGFGSDSDDEDANTGILGICMHSDEEYHENDDVSTIPLCWDSLHLEDNRENNNYEDFEWEEVDGRVDEREVLSIFDDRVGGDSGEGMENLEWQVLLNSTTIGTNPDLEQDAEPYFGDNDDYIYTAEYEMMLGQFGQFGENDNPLIGRPPASVSVVQNLPSVVVTQEDVDKNNALCAVCKDEFGVGEEVKQLPCSHRYHGDCIVPWLGIRNTCPVCRYEFPTDDADYERRRVQRSSRSM 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi522g00019 362 CDD RING-H2_RNF126-like 299 340 - -
Sebi522g00019 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 346 IPR013083 -
Sebi522g00019 362 SUPERFAMILY RING/U-box 278 346 - -
Sebi522g00019 362 Pfam Ring finger domain 299 340 IPR001841 -
Sebi522g00019 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 179 344 - -
Sebi522g00019 362 ProSiteProfiles Zinc finger RING-type profile. 299 340 IPR001841 -
Sebi522g00019 362 FunFam E3 ubiquitin-protein ligase RING1-like 260 346 - -
Sebi522g00019 362 SMART ring_2 299 339 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi522g00019 Sebi-Chr522 182109 183284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi522g00019 8 346 C3H Transcription Factor Family AT5G60820 38.480 7.73e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi522g00019 - - pcin:129307991 402.134