Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi522g00007 ATGGGGTGCTCATTCTCTGGTTTAAATGCATTATACGATTCGGTGAACGGAGGAGGGGACTTGTGGATCAACGAGAACCGTTTCCGCATCGTGAGGAAGCTCGGTGAAGGTGGCTTCTCCTATGTCTTCCTCGTCAAGGAGGTGCTCAACGACTCTGCTGTCGGTGGCCTCGCCACGAAGCTCAAACACTCCTCTCATCTCTCTGAAGACGGAACATATGCTATGAAAAAGGTCCTCATTCAGAATAATGAACAGCTAGAGTTGGTCAGGGAGGAGATCCGTGTTTCAACACTGTTCAATCACCCCAATCTGCTCCCACTTCTTGATCACGCAATCATTTCTGTTAAGCCTACCCAAGAAACATCTTGGCACAATGAAGCATACTTGTTATTTCCAGTTCATTTGGATGGAACATTGCTTGACAATGCCAAAACAATGAAAGCCAAGAAGGAATCCTATACTACCTCAGATGTTCTTCAAATATTTCGGCAGCTTTGTGCAGGACTAAAGCACATGCACAGTTTAGATCCTCCATATGCACATAATGATGTCAAACCTGGTAATGTTCTCATAACACATAGGAAAGGACAGCCGCCTCTTGCCATACTGATGGATTTTGGCAGTGCTCGTCCTGCCAGGAGGCAAATTACCTCCAGATCAGAGGCACTCCAGTTGCAGGAATGGGCATCTGAACATTGCTCTGCTCCTTTCCGAGCTCCTGAGCTGTGGGATTGTCCAAGCCATACTGATATAGATGAGAGGACTGACATTTGGTCACTAGGATGCACATTATATGCAATAATGTATGGGGTATCTCCATTTGAATATGCACTTGGAGAGTCTGGTGGAAGCCTGCAATTGGCTATTGTAAATGCTCAGATCAAATGGCCAGCTGGACCTAAGCCTTCATATCCAGAAGCTCTTCATCAGTTTGTGTCATGGATGCTTCAGCCCCAGGCTGCTGTGCGGCCCCGAATAGACGATATCATTATCCATGTTGATAAGTTGATTGCAAAGTTCACTCATTGA 1029 0.4597 MGCSFSGLNALYDSVNGGGDLWINENRFRIVRKLGEGGFSYVFLVKEVLNDSAVGGLATKLKHSSHLSEDGTYAMKKVLIQNNEQLELVREEIRVSTLFNHPNLLPLLDHAIISVKPTQETSWHNEAYLLFPVHLDGTLLDNAKTMKAKKESYTTSDVLQIFRQLCAGLKHMHSLDPPYAHNDVKPGNVLITHRKGQPPLAILMDFGSARPARRQITSRSEALQLQEWASEHCSAPFRAPELWDCPSHTDIDERTDIWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNAQIKWPAGPKPSYPEALHQFVSWMLQPQAAVRPRIDDIIIHVDKLIAKFTH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi522g00007 342 Gene3D Transferase(Phosphotransferase) domain 1 16 341 - -
Sebi522g00007 342 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 3 340 - -
Sebi522g00007 342 ProSiteProfiles Protein kinase domain profile. 28 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi522g00007 342 CDD STKc_16 27 338 - -
Sebi522g00007 342 SUPERFAMILY Protein kinase-like (PK-like) 20 332 IPR011009 -
Sebi522g00007 342 Pfam Protein kinase domain 65 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi522g00007 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Sebi522g00007 342 SMART serkin_6 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi522g00007 Sebi-Chr522 57426 61599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi522g00007 33 332 EF-hand Containing Proteins AT4G04710 25.246 2.17e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Sebi522g00007 Pkinase 9.9e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi522g00007 K08856 - gmx:100803659 643.269