Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi521g00018 ATGGGGTTTAATAGAGATAGACTTGTTTGGGAAGGTGCATCAGCTAAGGTTTATAAAAGGTCTCTTCCATTTGGTGGTGATGTAGCAGTGAAAAGATTTGAGAGAGCTGATGATTTAGATTGTCTACACAATCCTTTCGCCACTGAGTTTGCTACAATGGTGGGTTACTTGAGGCACAAAAACTTGTTTCAGTTTAAGGGATGGTTTTGTGAGGGGAATGAGTTGGTTCCGGTTTATGAGTACCTACCCAATGGGAGCTTGGATAAAGTTCTGCATAGAAACTTCAATTCTTCAAGTGTCCTTTCATGGAAGCAAAGAGTTAATATAGTTCTAGGGGTTGCTTCTGCTCTTACCTATCTTCATGAAGAATGTGAGAGGCAGATCATTCATAGTGATGTGAATACCTGCAATATAATGCTTGATGCAGATTTCAATGCCAAGCTTGGGGGTTTTGGACTTGTAGAAGTGTATGAACATAGTTCTATCACAAGGGATGCTACTATACCAGCAGGGACAATGGGTTATCTAGCTCCTGAATATGTGTATACTGGTGTTCCTACTGTCAAAACTGATGTGTATAGCTTTGGGGTAGTGATGATAGAAGTGGAAACTGGGAGAAAGCCTGTTCAAGATGATGGCAGTGGCACTGTTGTTGGTGATTATGTGTGGAACTTGTGGGAAAAGAACAAACTCATTGAGGTTTCTGATCCAAGATTGATGGGGAAGTTTGATACACTAGAGATGGAAAGGATGCTTCTGGTGGGGCTTCTTTGTGTACACCGTGATCATGATATGGCTTTGGTTGTTCATGATTTTGGACATGAAGCTTTACAAATTATGTTTGAAGAAGTAAAGTGCACTAGATTTCCGAATATGGTGGACACATGGTTGGGTCCCACCTTCTGTAACTCTCTTCCTCTCACCTTCTCAACCTCCAACAGGATACTCTCTTCTCCTTCTTCTTCAATGGCGTTCTTTCCATCTTCTCAGCAGCGCCATCATCGTCGCTGTAACTCAAACCCAAACCCTAACCCTACTCAGCCCCAGCCTGCTTTGCTCGTCTTTTCCGGAGGGACTGCCTTCAACGGCGTCGTCGAAGAGCTTAAGAACTTCACCACCCGCGTTGCTCACGTTCTCCCTGTTTCTGACGACGGTGGAAGCACAGCCGAGATCGTTCGTGTCCTCGGTGGTCCTGCTGTTGGAGACATACGTTCCAGGTGTCTGAGATTGTCTGATCAAAGCACTGCTGAGGCTCTCGCGGTTCGAAATTTGCTTGGTCATCGTCTACCTATTGACCCGCTGCAAGCTAAATCAGAATGGTGTGTCAAAACCCTACAGGGAGACTATTCGAGCTTTTCTGGTTTATTTCCAGAATCAGGTGACTTCTACAAGCAAACTGAGGCTATTTCTGATTATTTCTCGATTGCCTCTTAA 1434 0.4421 MGFNRDRLVWEGASAKVYKRSLPFGGDVAVKRFERADDLDCLHNPFATEFATMVGYLRHKNLFQFKGWFCEGNELVPVYEYLPNGSLDKVLHRNFNSSSVLSWKQRVNIVLGVASALTYLHEECERQIIHSDVNTCNIMLDADFNAKLGGFGLVEVYEHSSITRDATIPAGTMGYLAPEYVYTGVPTVKTDVYSFGVVMIEVETGRKPVQDDGSGTVVGDYVWNLWEKNKLIEVSDPRLMGKFDTLEMERMLLVGLLCVHRDHDMALVVHDFGHEALQIMFEEVKCTRFPNMVDTWLGPTFCNSLPLTFSTSNRILSSPSSSMAFFPSSQQRHHRRCNSNPNPNPTQPQPALLVFSGGTAFNGVVEELKNFTTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDQSTAEALAVRNLLGHRLPIDPLQAKSEWCVKTLQGDYSSFSGLFPESGDFYKQTEAISDYFSIAS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi521g00018 477 ProSiteProfiles Protein kinase domain profile. 3 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi521g00018 477 FunFam Lectin-domain containing receptor kinase A4.3 82 295 - -
Sebi521g00018 477 Gene3D Phosphorylase Kinase; domain 1 1 81 - -
Sebi521g00018 477 SUPERFAMILY CofD-like 350 432 IPR038136 -
Sebi521g00018 477 PANTHER - 2 263 - -
Sebi521g00018 477 Pfam 2-phospho-L-lactate transferase CofD 354 434 IPR002882 GO:0043743
Sebi521g00018 477 Gene3D Transferase(Phosphotransferase) domain 1 82 279 - -
Sebi521g00018 477 Gene3D - 348 474 IPR038136 -
Sebi521g00018 477 SUPERFAMILY Protein kinase-like (PK-like) 3 262 IPR011009 -
Sebi521g00018 477 Pfam Protein tyrosine and serine/threonine kinase 12 211 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi521g00018 Sebi-Chr521 493042 496441 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi521g00018 2 271 Receptor kinase-like Gene Family AT5G42120 62.455 2.05e-112 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Sebi521g00018 PK_Tyr_Ser-Thr 1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi521g00018 - - gmx:100783805 455.292