Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi521g00012 ATGCAACCGACATCTGGCGGTGGGCTTCAGCGGTTCCACTCAACTCCGGCGAGTTGGTTAGAATCACTTCTTCTAAAGGACGAAGAACAACAGCAACAGCCGTTATCCTTCACTCAGCTGCTTTCCTCTTCTTCCTCTAATCCAAATCCAATCATCACAGAGGAAGTTGAAAAGCATACTAGTCATGACATCGAAATTGACAAGATTTTAGAGGATTCTGTGCCTTGTAGGCTTCGTGCAAAGCGTGGTTGTGCTACGCATCCAAGGAGCATTGCTGAAAGGGTTCGGAGGACTCGAATCAGTGACCGCATAAGAAAGCTTCAAGAACTTGTGCCAAACATGGATAAGCAAACAAATACTGCTGACATGCTAGATGAGGCGGTAGCTTATGTCAAGTTTCTACAAAATCAGATTGAGATTTTCAGTGTTCTGATGAAGATCAATCATACACAGGTTGCTGATTATAATTTTTTCAACATTTGGAGATACCTTAGAGGATAA 501 0.4291 MQPTSGGGLQRFHSTPASWLESLLLKDEEQQQQPLSFTQLLSSSSSNPNPIITEEVEKHTSHDIEIDKILEDSVPCRLRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQIEIFSVLMKINHTQVADYNFFNIWRYLRG 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi521g00012 166 Gene3D - 85 153 IPR036638 GO:0046983
Sebi521g00012 166 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 134 IPR011598 GO:0046983
Sebi521g00012 166 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 87 144 IPR036638 GO:0046983
Sebi521g00012 166 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 32 142 - -
Sebi521g00012 166 SMART finulus 90 140 IPR011598 GO:0046983
Sebi521g00012 166 FunFam Transcription factor bHLH130 family 85 151 - -
Sebi521g00012 166 Pfam Helix-loop-helix DNA-binding domain 89 135 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi521g00012 Sebi-Chr521 416333 419042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi521g00012 63 139 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 80.519 2.71e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi521g00012 HLH 9.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi521g00012 - - gmx:100527723 163.696