Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi521g00007 ATGACAATGGCACAATTACCTTGTGACGACAAAGGGGTGTGCATGGTATGCAAATCTCTCCCAACGAAGGAAGGGAAGCTTGTTTGCTTCACTTGTGAAACCCCTTGGCATGTGGCTTGTCTCTCCTCCCTTCCACCCACGCTTGCTAGCACCATTAAATGGTCAGTGGAGACGGATGCTTCTCTCTCACGAGAAGAGAAGAACAAAAAACAACAAGACCTAATGTCCGGAAAGGCCGGCAAGGCAGTTGAAGAAAAAGACAAGAATGAAAATGGCAAGTCTACTCCTTGTGGTCACACTTTCTGTCTAAAGTGCTTCAAGAAATTGATTCAACAAGGGAAAAGAACTTGTAGCATTTGTCGGCAAGGTATTCCTGCAAAAATGGCCAACCAGCCTCGTATCAATTCTGCATTGGCACATGCCATTTGTATTGCAAAGAAAGACGACAGTAATGGTAGAGTCAATAGGCCTTCTCGTGTTCCTCCTTATACAAATAATCAAGATAAACCAGATCAACCATATATGACGGATCGTGCACAAAGGAAGGGTCGTGCTAATGCTGCAAATAGGCTGGAGTGTAGGCAATGGGGTGCTCACTTCTTACCAATTGGTGGCATTGCCGGACAATCAAATCGTGGTGCACAATCTGTTGTTCTCTCTGGAGGTTATGTTGATGATGAGGATCATGGAGAATGTGGTGGTAAGGATCTCACTGGAAAAAAACGCACAAACAAGAATCACTCTTTTGACCAGAAGTTTGAAAAATACAATCGCGCACTCCAGATCAGTTGTCAAGAGGGTTATCCGGTTCGAGTTGTGAGTGATGATCGTGGGGATAGGCCCAAACCCTTGCCATTCATTAATGAGCTACAAAAGGCTACCACCATATTTGAAAGAACCAAATCTCCAGCATGGGATTTTGATGATGAAGATTCTTGTTGGAAATGGAAGAAACCACCACCCCCCAGCAGAAAAAAGGTACAAATTGAGGAATCTACCAAGATAGAAAAGTCAAGTAAAGGAAAAAGGAAATTCCAAAAGATGTCAATCAAGGAACAATTGCGAAAAGGGTTCTCATGCCAGATATGCAAGCATGTTATGGATTCACCAGTAACAACACCATGTGGTCATAATTTCTGCAAGTCTTGTTTGGAAGGTGCATTCGCTGGTCAGACTTTCATGAGAGAGAGAAACATATGTGGGAGAACGCTTAGGTCCCAAAAAAATGTGATGAAATGTCCTACCTGCACTATTGACATCTCTGATTATCTTCAAAACTTTCAGGTTGATATAGGTTTGAAGGGTGTAATTGAGTCACTGAAAGCCAAGATTGAAGAAAATGGAGAAACGTTAGAGGCAAGTGAAGATATAGATCGATTACAGGAAAATGGTGTTGAAGAAACCAATAAGGCGACAGATTCTGTAGTGAAGCACAATGCAAAAAGAAAGAAAATTGATTCTACAAAACAATTTCCTGAGATGAGTGATGATGGTAAAATGAATAGAGGGAAAGAAATAAAAGCTGAGAAAGTAGAGGATGAAGAAAATGTTTCTCCATTAAGTCCTCTCAATATGTCAAAATGA 1584 0.4141 MTMAQLPCDDKGVCMVCKSLPTKEGKLVCFTCETPWHVACLSSLPPTLASTIKWSVETDASLSREEKNKKQQDLMSGKAGKAVEEKDKNENGKSTPCGHTFCLKCFKKLIQQGKRTCSICRQGIPAKMANQPRINSALAHAICIAKKDDSNGRVNRPSRVPPYTNNQDKPDQPYMTDRAQRKGRANAANRLECRQWGAHFLPIGGIAGQSNRGAQSVVLSGGYVDDEDHGECGGKDLTGKKRTNKNHSFDQKFEKYNRALQISCQEGYPVRVVSDDRGDRPKPLPFINELQKATTIFERTKSPAWDFDDEDSCWKWKKPPPPSRKKVQIEESTKIEKSSKGKRKFQKMSIKEQLRKGFSCQICKHVMDSPVTTPCGHNFCKSCLEGAFAGQTFMRERNICGRTLRSQKNVMKCPTCTIDISDYLQNFQVDIGLKGVIESLKAKIEENGETLEASEDIDRLQENGVEETNKATDSVVKHNAKRKKIDSTKQFPEMSDDGKMNRGKEIKAEKVEDEENVSPLSPLNMSK 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi521g00007 527 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 66 188 IPR045134 -
Sebi521g00007 527 SUPERFAMILY RING/U-box 352 441 - -
Sebi521g00007 527 SMART G9a_1 178 310 IPR003105 -
Sebi521g00007 527 ProSiteProfiles Zinc finger RING-type profile. 360 417 IPR001841 -
Sebi521g00007 527 MobiDBLite consensus disorder prediction 59 93 - -
Sebi521g00007 527 Pfam SAD/SRA domain 189 276 IPR003105 -
Sebi521g00007 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 149 IPR013083 -
Sebi521g00007 527 ProSitePatterns Zinc finger RING-type signature. 375 384 IPR017907 -
Sebi521g00007 527 ProSiteProfiles YDG domain profile. 176 320 IPR003105 -
Sebi521g00007 527 Gene3D - 188 286 IPR036987 -
Sebi521g00007 527 SMART ring_2 14 120 IPR001841 -
Sebi521g00007 527 SMART ring_2 360 416 IPR001841 -
Sebi521g00007 527 MobiDBLite consensus disorder prediction 157 173 - -
Sebi521g00007 527 SUPERFAMILY PUA domain-like 189 274 IPR015947 -
Sebi521g00007 527 MobiDBLite consensus disorder prediction 454 516 - -
Sebi521g00007 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 463 IPR013083 -
Sebi521g00007 527 SUPERFAMILY RING/U-box 89 133 - -
Sebi521g00007 527 MobiDBLite consensus disorder prediction 318 342 - -
Sebi521g00007 527 Pfam RING-type zinc-finger 360 414 IPR027370 -
Sebi521g00007 527 Pfam zinc-RING finger domain 85 122 IPR001841 -
Sebi521g00007 527 MobiDBLite consensus disorder prediction 454 527 - -
Sebi521g00007 527 ProSiteProfiles Zinc finger RING-type profile. 96 121 IPR001841 -
Sebi521g00007 527 MobiDBLite consensus disorder prediction 149 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi521g00007 Sebi-Chr521 287867 291672 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi521g00007 5 446 C2H2 Transcription Factor Family AT5G39550 38.605 2.70e-115 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi521g00007 K10638 - gmx:100801535 578.941