Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi521g00006 ATGGCCAACCAGCCTCGTATCAATTCTGCATTGGCACATGCCATTTGTATTGCAAAGAAAGACGACAGTAATGGTAGAGTCAATAGGCCTTCTCGTGTTCCTCCTTATACAAATAATCAAGATAAACCAGATCAACCATATATGACGGATCGTGCACAAAGGAAGGGTCGTGCTAATGCTGCAAGTGGAAAGATTTTTGTCACTGTGCCTACTGATCATTTTGGTCCAATCCCACCAGAGAATGACCCTTTGCATAATAAGGGTCTGGTAGTTGGTGAATCTTGGCCAGATAGGCTGGAGTGTAGGCAATGGGGTGCTCACTTCTTACCAATTGGTGGCATTGCCGGACAATCAAATCGTGGTGCACAATCTGTTGTTCTCTCTGGAGGTTATGTTGATGATGAGGATCATGGAGAATGGTTTCTCTACACAGGAAGTGGTGGTAAGGATCTCACTGGAAACAAACGCACAAACAAGAATCACTCTTTTGACCAGAAGTTTGAAAAATACAATCGCGCACTCCAGATCAGTTGTCAAGAGGGTTATCCGGTTCGAGTTGTGAGATCTCACAAAAAGAAGCGATCCTCATATGCCCCCGAGAGTGGAGTGCGGTATGATGGAATTTATAGAATTGAAAAGTGTTGGCAGATTGCGGGACAACAGGGTTTCAAAGTTTGTCGATTTCTATTCATAAGATGTGACAATGAACCTGCCCCTTGGACAAGGATGAAGATTCTTGTTGGAAATGGAAGAAAACCACCCCCCAGCAGAAAAAAGGTACAAATTGAGGAATCTACCAAGATAGAAAAGTCAAGTAAAGGAAAAAGGAACTTCCAAAAGATGTCAATCAAGGAACAATTGCGAAAAGGGTTCTCATGCCAGATATGCAAGCATGTTATGGATTCACCAGTAACAACACCATGTGGTCATAATTTCTGCAAGTCTTGTTTGGAAGGTGCATTCGCTGGTTTGAAGGGTGTAATTGAGTCACTGAAAGCCAAGGTTGAAGAAAATGGAGAAACGTTAGAGGCAAGTGAAGATATAGATCGATTACAGGAAAATGGTGTTGAAGAAACCAATAAGGCGACAGATTCTGTAGTGAAGCACAATGCAAAAAGAAAGAAAATTGATTCTACAAAACAATTTCCTGAGATGAGTGATGATGGTAAAATGAATGGAGGGAAAGAAATAAAAGCTGAGAAAGTAGAGGATGAAGAAAATGTTTCTCCATTAAGTCCTCTCAATATGTCATCAAATGAGTGA 1263 0.4133 MANQPRINSALAHAICIAKKDDSNGRVNRPSRVPPYTNNQDKPDQPYMTDRAQRKGRANAASGKIFVTVPTDHFGPIPPENDPLHNKGLVVGESWPDRLECRQWGAHFLPIGGIAGQSNRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLTGNKRTNKNHSFDQKFEKYNRALQISCQEGYPVRVVRSHKKKRSSYAPESGVRYDGIYRIEKCWQIAGQQGFKVCRFLFIRCDNEPAPWTRMKILVGNGRKPPPSRKKVQIEESTKIEKSSKGKRNFQKMSIKEQLRKGFSCQICKHVMDSPVTTPCGHNFCKSCLEGAFAGLKGVIESLKAKVEENGETLEASEDIDRLQENGVEETNKATDSVVKHNAKRKKIDSTKQFPEMSDDGKMNGGKEIKAEKVEDEENVSPLSPLNMSSNE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi521g00006 420 MobiDBLite consensus disorder prediction 22 61 - -
Sebi521g00006 420 MobiDBLite consensus disorder prediction 338 420 - -
Sebi521g00006 420 SMART G9a_1 79 236 IPR003105 -
Sebi521g00006 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 251 325 IPR045134 -
Sebi521g00006 420 Gene3D - 55 248 IPR036987 -
Sebi521g00006 420 MobiDBLite consensus disorder prediction 30 46 - -
Sebi521g00006 420 ProSitePatterns Zinc finger RING-type signature. 308 317 IPR017907 -
Sebi521g00006 420 Pfam RING-type zinc-finger 293 317 IPR027370 -
Sebi521g00006 420 MobiDBLite consensus disorder prediction 338 407 - -
Sebi521g00006 420 Pfam SAD/SRA domain 85 235 IPR003105 -
Sebi521g00006 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 405 IPR013083 -
Sebi521g00006 420 ProSiteProfiles Zinc finger RING-type profile. 293 317 IPR001841 -
Sebi521g00006 420 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 55 250 - -
Sebi521g00006 420 ProSiteProfiles YDG domain profile. 84 232 IPR003105 -
Sebi521g00006 420 MobiDBLite consensus disorder prediction 246 278 - -
Sebi521g00006 420 SUPERFAMILY PUA domain-like 58 244 IPR015947 -
Sebi521g00006 420 MobiDBLite consensus disorder prediction 256 278 - -
Sebi521g00006 420 SUPERFAMILY RING/U-box 277 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi521g00006 Sebi-Chr521 281427 284291 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi521g00006 1 329 C2H2 Transcription Factor Family AT5G39550 52.925 1.00e-125 375