Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi520g00021 ATGCACGCAATATATTTATACACCATCACCAAATTGCCTTTACCACCAGATCAAACATTCACTATGACAGATCCTCAATCCAATTTATTTGATGAATGGTTCAACTTCATGCTTCTCCACCCTCACCACTCTTCTTCTTCCTCTCAATCCAACAATATGTGTTCATCATCTTCATCTTCAATATCATACCCTTTTCCTTACTCAAACAACAGCAACAGAGAGGCCCTTCCTCTCATTAACAAGCTAACCCTCAAAAATCAACATGATCAAAATTATGAACCCTCAAACAGTAATAGAACAATAGAAGAGGCTTTGACTGGTACTGATCAAGAAGAGGATGATGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCTAGAATGAGTGGTGGTACTTCCTCTGATCTGGGATCAAGGAATATGGTCTCAATCTCAACTTCTTCAATAGAAAAGGAGACCATTTCTGAACAACCCTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCAACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCTCATGTCCTGTGTGCTCTAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTAAAAGGAACACAGCCAACAGCTATGTTAAGGCTTCCATGCTATTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACTCTACAAACACATTATAAGAGAAAGCATGGCATAAAACCCTATATGTGCAGAAAATGTGGCAAAGCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAATTGTGGCAAAATATGGTATTGTTTATGTGGGTCAGATTTCAAACACAAAAGGTCTCTAAAAGATCACATCAAAGCCTTTGGCTATGGCCATGGAGCTTTTGGCATTGATTGCTTGCAAGAAGAAGATGAAGCAACCTCAGAAATTGAACATGATGGGGAAGGCTCATTGTGA 1032 0.405 MHAIYLYTITKLPLPPDQTFTMTDPQSNLFDEWFNFMLLHPHHSSSSSQSNNMCSSSSSSISYPFPYSNNSNREALPLINKLTLKNQHDQNYEPSNSNRTIEEALTGTDQEEDDETVTVALHIGLPRMSGGTSSDLGSRNMVSISTSSIEKETISEQPLDRLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCYCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEATSEIEHDGEGSL 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi520g00021 343 ProSitePatterns Zinc finger C2H2 type domain signature. 184 204 IPR013087 -
Sebi520g00021 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 286 IPR013087 -
Sebi520g00021 343 FunFam Zinc finger protein WIP2 235 317 - -
Sebi520g00021 343 SUPERFAMILY beta-beta-alpha zinc fingers 250 286 IPR036236 -
Sebi520g00021 343 SMART c2h2final6 266 286 IPR013087 -
Sebi520g00021 343 SMART c2h2final6 182 204 IPR013087 -
Sebi520g00021 343 FunFam zinc finger protein WIP2-like 181 204 - -
Sebi520g00021 343 Gene3D Classic Zinc Finger 181 204 - -
Sebi520g00021 343 Gene3D Classic Zinc Finger 245 315 - -
Sebi520g00021 343 Pfam Zinc finger, C2H2 type 182 201 IPR013087 -
Sebi520g00021 343 SUPERFAMILY beta-beta-alpha zinc fingers 176 204 IPR036236 -
Sebi520g00021 343 PANTHER ZINC FINGER PROTEIN WIP2 38 336 IPR043584 GO:0003700|GO:0010468
Sebi520g00021 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 209 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi520g00021 Sebi-Chr520 445103 447269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi520g00021 22 336 C2H2 Transcription Factor Family AT3G57670 54.667 1.97e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi520g00021 zf-C2H2_6 9.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi520g00021 - - gmx:100799060 495.738