Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi520g00016 ATGAAGACGCTAACTATTAATACTGAAGATTCTTTTTCCAGTTTACTGGAACTTGCTTCTAACAATGATATTGAAGGTTTTAAGCTGCTTTTAGATAAGGAAGGTTCTTCAATTAATGAAGTTGGGCTCTGGTATGGTCGGCAAAATGGATCCAAACAAATTGTTCTTGAGCATAGAACTCCTTTGATGGTTGCTGCTACCTATGGTAGTATTGATGTTCTGAAGCTTATACTTTCGCGTCCAGAAGCGGATGTGAATTTCGCATGTGGGGTGAATAAAAGCACTGCCCTTCACTGTGCTGCCTCTGGTGGGTCTGTTAATGCAGTTGATGCTGTGAAGCTTCTTTTGTCTGGTGGTGCTGATCCCAACTGCGTTGATGCCAATGGGAACCGTCCTGTTGATGTCATTGTTGTTCCTCCCAGGCTGCAAGGCATGAAAGCAATTCTTGAGGAACTCCTTTCAGACAGTGCTTCTGATGGCTCTGTTGGTGACTTGTCTGTTCCGGTGTCTGTTAATTCTTCTAGTCCTGGTTCACCTGCCCATTTATCATCACTTGAAAATGGGATGCCATACTCTCCTTCAAGCTCACCGCCTTCTCCTGTGGCTTCAAAGTTTACTGATGCTGCTGTTAGCTCTTTATCAGAGAAGAAAGAATATCCAATTGATCCATCACTTCCGGATATAAAAAACAGCATATATGCAACTGATGAATTTCGGATGTTTTCATTCAAGGTCCGCCCTTGTTCCCGGGCATACTCTCATGATTGGACTGAGTGTCCATTTGTTCATCCTGGAGAGAATGCTCGGAGGAGAGACCCCAGAAAGTTTCATTACAGCTGTGTGCCATGCCCTGATTTTAGGAAAGGGGCTTGTAGACGTGGAGATATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCAGCTCAGTATCGAACACGCCTCTGTAAAGATGGCACTAGCTGCAATAGAAGGGTGTGTTTTTTTGCTCACACTGCAGAGGAATTGCGGCCACTATATGTGTCCACTGGATCGGCTGTACCTTCGCCACGGTCATCTGCCTCTGCACCTAATGTCATGGACATGGCTGCTGCAATGAGTCTTTTGCCTGGTTCACCTTCGTCAGTCTCTTCCATGTCTCCATCCCATTTTGCCCAGCCGATGTCCCCATCTGCAAATGGCATCTCACTTTCATCTGCTGCTTGGGCACAGCCTAATGTGCCAGCTCTTCATTTACCAGGAAGCAATCTTCAATCTAGTCGCCTGAGGTCTTCTCTTAGTGCTCGTGACATTCCACCTGAAGACTTGAATGTGTTGTCTGATTTTGATGGTCAGCAGCATATTATGAATGATTTGAGCTGTTTCTTACAGTCCCGTCCTGGTGCCACTTCAGTAGGTCGTTCTTGTCGATCTAAGACACTAACTCCTTCAAATCTGGAAGAGCTCTTTTCTGCTGAAATTTCTTCATCTCCCCGGTATTCTGACCCAGCTGCGGCTTCTGTTTTTTCCCCTACACACAAATCAGCTGTTCTAAATCAGTTTCAGCAGGTTCAAAATATGCTATCACCTATAAATACCAATGTGCTGTCTCCGAAGAGTGTTGAGCATCCTCTGTTACAGGCTTCATTTGGAGTCTCTCCTTCTGGAAGGATGTCACCTAGAAGTGTTGAACCAATCTCCCCAATGAGCTCTCGCATGTCAGCTTTTGCGCAGCGTGAGAAACAGCTGCGGAGTATTAGTTCTAGGGACCTTGGTGCCAACAACCCTGCCTCAGTTGTTGGCTCCCCTGTAAACACTTGGTCTAAGTGGGGATCTCCTAATGCAAAAGTTGATTGGTCAGTAAGTGGAGATGAATTAGGTCGTCAAATGCGAAGATCATCCTCATTTGAACTTAAAAACAACGGGGAAGAGCCTGATCTATCATGGGTCCAATCCCTGGTGAAGGAATCCCCACAGGAGATGGTTAAAGAGAAGTTTGGATCATCTGGCCCTATTGCATCTGCTGATGGACTGAATCCCAATTCCCAAATTGAATCTGTTGATCATTCTGTTTTAGGAGCTTGGCTTGAGCAAATGCAACTGGATCAGCTCGTAGTCTAG 2106 0.4549 MKTLTINTEDSFSSLLELASNNDIEGFKLLLDKEGSSINEVGLWYGRQNGSKQIVLEHRTPLMVAATYGSIDVLKLILSRPEADVNFACGVNKSTALHCAASGGSVNAVDAVKLLLSGGADPNCVDANGNRPVDVIVVPPRLQGMKAILEELLSDSASDGSVGDLSVPVSVNSSSPGSPAHLSSLENGMPYSPSSSPPSPVASKFTDAAVSSLSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASAPNVMDMAAAMSLLPGSPSSVSSMSPSHFAQPMSPSANGISLSSAAWAQPNVPALHLPGSNLQSSRLRSSLSARDIPPEDLNVLSDFDGQQHIMNDLSCFLQSRPGATSVGRSCRSKTLTPSNLEELFSAEISSSPRYSDPAAASVFSPTHKSAVLNQFQQVQNMLSPINTNVLSPKSVEHPLLQASFGVSPSGRMSPRSVEPISPMSSRMSAFAQREKQLRSISSRDLGANNPASVVGSPVNTWSKWGSPNAKVDWSVSGDELGRQMRRSSSFELKNNGEEPDLSWVQSLVKESPQEMVKEKFGSSGPIASADGLNPNSQIESVDHSVLGAWLEQMQLDQLVV 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi520g00016 701 Gene3D - 3 187 IPR036770 -
Sebi520g00016 701 Pfam Ankyrin repeats (3 copies) 19 126 IPR002110 GO:0005515
Sebi520g00016 701 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 282 302 IPR000571 GO:0046872
Sebi520g00016 701 SMART ANK_2a 92 124 IPR002110 GO:0005515
Sebi520g00016 701 SMART ANK_2a 57 87 IPR002110 GO:0005515
Sebi520g00016 701 SMART ANK_2a 10 40 IPR002110 GO:0005515
Sebi520g00016 701 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Sebi520g00016 701 SUPERFAMILY Ankyrin repeat 9 154 IPR036770 -
Sebi520g00016 701 FunFam Zinc finger CCCH domain-containing protein 66 235 303 - -
Sebi520g00016 701 MobiDBLite consensus disorder prediction 159 204 - -
Sebi520g00016 701 Gene3D - 277 340 - -
Sebi520g00016 701 SMART c3hfinal6 277 303 IPR000571 GO:0046872
Sebi520g00016 701 SMART c3hfinal6 312 335 IPR000571 GO:0046872
Sebi520g00016 701 ProSiteProfiles Zinc finger C3H1-type profile. 282 304 IPR000571 GO:0046872
Sebi520g00016 701 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Sebi520g00016 701 PANTHER UNKEMPT FAMILY MEMBER 17 652 IPR045234 -
Sebi520g00016 701 MobiDBLite consensus disorder prediction 157 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi520g00016 Sebi-Chr520 288820 290925 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi520g00016 9 698 C2H2 Transcription Factor Family AT5G12850 55.177 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi520g00016 Ank_2 3.4e-11 CL0465