LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi520g00014	ATGGCGGACAACACCTCTCACAAAGGAACTGAGAAAGAACAATCTGAGGTTCATTCTAGCCCAATACAACAAACTAGAAGAAAAAGGCAGTATCAGGCGCATATTCGCGGCCTCAATGCATACGACCGCCACAAAAAGTTCATTAACGACTACGCTAGTTTCTATGGGAAAGAAAAGCCTTCAAACGTAAAGTTGCCTATTAAAACAGATCAAGATACACTAAGAGAAGGATACAGATTTATACGGTCAGAGGAAGATGATATGGATCCATCATGGGAACAAAGGCTGGTGAAGCGTTATTATGATAAGCTTTTTAAGGAATACTGCCTTGCTGACATGTCACAGTACAAGAGTGGTAAGATTGGTCTCAGATGGAGGACAGAGAAGGAAGTCATATCTGGCAAGGGCCAGTTCATATGTGGTAACAAGCATTGCAATGAGAAAGATGGATTAGCAAGTTATGAGGTGAACTTTTGTTACTTTGAAGCTGGAGAAAACAAACAAGCCCTGGTTAAATTGGTAGCATGTGAGAGATGTGCACAGAAACTTAATTACAAGAGGCAGAAAGAGAAGGAGCAATTAGAAAAAAGACAAGAAGAACAGGATAGAAGAAAAAGGAACCGTTCAAAGAGTGATGATGATCTAGATGAGTTTCAAGAAAGCAAAGAGAGAAGACGGAAAGATTTAGGCGACAACAACAGGGGAGACATCAGACAAGGACAACGACCTTTGCGTGAATCTTGGTGGCGTGGAGTGAGGGAAATTGAGAATGCCTCCAAATCATCTTCATCTGATCAGCTAAACGGTTCAATCATGAATGGTGTCACACATTCAGAGGTCAATGAAGGGCTGGCTGGTGGAATTAATTTCAATAAACAAAGGCAGCCTATGGTTTCTCCTTCACTGTCTGTAACTGATAAGTCAGGTAGGGATGTTGTCAAAGAGCACCAAAACATCAAACATGCCCTGTCCTCAACCCCATTTACCATGGCCAAACACCTTAGTCCAAATTCCCAGATGGAACTTGTTGGTCATTCAATTGTCCTAACTTCGCCTTATTCAGATGCACAGTATGGTCGAATCTTAGCTACTTATGGTCAACAAGCTATGATAAACCCTCAGTTGTATGGAATGCATCATGCTAGAATTCTTTTGCCACTTGAAATGGAAGAGGAACCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCGAAGGCTGAGCTTGAAAAGAAAGGAATTAAAGTTAGAAAGCCATATCTTCACGAATCCCGTCACCTACATGCTATGAGAAGGGCAAGGGGAAATGGGGGTCGCTTTCTCAATACAAAGAAGCTTGAGCACAACAATTCTAATGCCACTCCAGAAAAAGGCAACAATACTAGTGCAAACTCCTCAACAAGCTCTCATGCCACTCAACATTTGCTTACCAACAATGAGAATCTAGGCTCATCAAATGCATCACAGTCCATGGTTCAGAACATGCACAAAGTGCAGAGTTTCAACCTTGGTTACCATGATGGCAATGGTCTCACATCACTATACCATTCACAGGCAAATGGTAAACAGAAGGGGGACTGCTTTGGTAAAGAGAGGGTTCCAAATGGGGCTATTAAATAA	1641	0.4193	MADNTSHKGTEKEQSEVHSSPIQQTRRKRQYQAHIRGLNAYDRHKKFINDYASFYGKEKPSNVKLPIKTDQDTLREGYRFIRSEEDDMDPSWEQRLVKRYYDKLFKEYCLADMSQYKSGKIGLRWRTEKEVISGKGQFICGNKHCNEKDGLASYEVNFCYFEAGENKQALVKLVACERCAQKLNYKRQKEKEQLEKRQEEQDRRKRNRSKSDDDLDEFQESKERRRKDLGDNNRGDIRQGQRPLRESWWRGVREIENASKSSSSDQLNGSIMNGVTHSEVNEGLAGGINFNKQRQPMVSPSLSVTDKSGRDVVKEHQNIKHALSSTPFTMAKHLSPNSQMELVGHSIVLTSPYSDAQYGRILATYGQQAMINPQLYGMHHARILLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKGIKVRKPYLHESRHLHAMRRARGNGGRFLNTKKLEHNNSNATPEKGNNTSANSSTSSHATQHLLTNNENLGSSNASQSMVQNMHKVQSFNLGYHDGNGLTSLYHSQANGKQKGDCFGKERVPNGAIK	546

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi520g00014	546	MobiDBLite	consensus disorder prediction	526	546	-	-
	Sebi520g00014	546	MobiDBLite	consensus disorder prediction	1	15	-	-
	Sebi520g00014	546	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	392	447	IPR001289	GO:0003700\|GO:0006355
	Sebi520g00014	546	ProSiteProfiles	NF-YA/HAP2 family profile.	390	450	IPR001289	GO:0003700\|GO:0006355
	Sebi520g00014	546	MobiDBLite	consensus disorder prediction	450	478	-	-
	Sebi520g00014	546	Pfam	Folate-sensitive fragile site protein Fra10Ac1	69	185	IPR019129	-
	Sebi520g00014	546	MobiDBLite	consensus disorder prediction	289	308	-	-
	Sebi520g00014	546	MobiDBLite	consensus disorder prediction	190	242	-	-
	Sebi520g00014	546	MobiDBLite	consensus disorder prediction	1	31	-	-
	Sebi520g00014	546	Gene3D	-	390	451	-	-
	Sebi520g00014	546	ProSitePatterns	NF-YA/HAP2 subunit signature.	395	415	IPR018362	GO:0003677\|GO:0016602
	Sebi520g00014	546	MobiDBLite	consensus disorder prediction	443	478	-	-
	Sebi520g00014	546	MobiDBLite	consensus disorder prediction	292	306	-	-
	Sebi520g00014	546	Coils	Coil	180	207	-	-
	Sebi520g00014	546	PRINTS	CCAAT-binding transcription factor subunit B signature	393	415	IPR001289	GO:0003700\|GO:0006355
	Sebi520g00014	546	PRINTS	CCAAT-binding transcription factor subunit B signature	424	447	IPR001289	GO:0003700\|GO:0006355
	Sebi520g00014	546	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	227	505	IPR001289	GO:0003700\|GO:0006355
	Sebi520g00014	546	SMART	cbf3	389	450	IPR001289	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi520g00014	Sebi-Chr520	208313	242550	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi520g00014	241	494	CCAAT-HAP2 Transcription Factor Family	AT5G12840	40.226	4.24e-42	150

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Sebi520g00014		Fra10Ac1	7.7e-49	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi520g00014	K13121		K08064	gmx:100782085	426.017