Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi520g00010 ATGGGAAAGAAAAACAAATTGAAGGAGAATGGTGGCAAAGAACACTGCCCCTTAACAATTTTTGTCTCCAATTTGCCCTACTCTTTTTCCAACTCTCAGCTTGAGGAGACATTCAGTGAGGTTGGACCTGTTAGGCGTTGCTTCATGGTCACACAGAAGGGGTCTGCCCAGCATCGTGGTTTTGGTTATGTCCAATTTGCTGTTGAGGAAGACGCTAATCGTGCTATTGAGCAAAAGAATGGTTCATCTGTTGGAGGCCGGAAAATCGTAGTGAAGCAAGCAATGCCTCGTCCTCCTCGTGATGAAAGACAATCAAAACCAAATCAAGTGGGCAAGACAGATGATCTCATGAAGTCAGAAAATGATAAGGATGACAGATTATCTGGAGTAGAGAAGCCAGTTTCAGTTTTGAAGGAAGAAGAAGTACTAGTTTCAAATAAACAAAAAAACTCAAGGAAGCCCTTAGAAATGAAAAAAGCAACTCTTTGTAATGATGTGGCTGATGAGGGGGGTTGCTCAGAAAAGCAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTTGTGAATTCTGATATGGCCGAAGATGTCCACCGTCAAGCCAGAGAGATCGGCACTGTGTGTTCTATTAAGTACCCCCTTTCGAGGAAAGATCTTGAGCAAAATGGTCTCCTGCAGGATGGCTGTATTTTGGATGCTTCAGCTGTACTTTATACAAGTGTAAAGTCAGCTCGAGCTTCTGTTGCAGTGTTACATAAAAAAGAGATAGGAGGAGGAATTGTTTGGGCCCGTCAACTGGGTGGAGAGGGCTCCAAGACTCAAAAATGGAAGCTTATTGTCAGAAATCTTCCCTTCAAGGCCAAAGAAAATGAAATAAGAGATATGTTTTCATCTGCAGGGTATGTGTGGGATGTATTTATTCCACACAGGTCAGACACAGGTCTGTCTAAGGGTTTTGCGTTTGTAAAATTCACCTGCAAGCTAGATGCAGAAAATGCCATTCAAAAGCTCAATGGATCAAAGTTTGAGAAACGGCTCATAGCTGTTGACTGGGCTGTTCCAAAAAAGATATTCAGTAGTGATAAAAATGATGCTCTTGCTTCAGAGACAGGGCAACAAAAGTTGAGAGATGATGATAGTAGAGCTACCGAGGACGATGTTGAGCATATTGACAAACAATCTTGTGATGGAGATGATAGTAATGTAGATTACTCTAGTGCCATTGAGGAAGAAGGCTGTCCTTCTGAAGATAATTTTGAAAAGGAAGCAGACATCGCAAGAAAGGTCCTTAACAACTTGATTACATCTTCCACAAAAGGAGCATCTGTAAATAATGATTCTATGTGTTCCAAAGAAAATAAGGAGCCAAAATCCAATGAAATTGTTAAAGATGCAGATAGTAAAGCATCTAATGAGTCTGAAAAGGTTTCAGGTGTTTCTAAGCCTGAAATTTCCGGCAGAAGCAAGTTATCAAATCATAAACAAACAGAAGAAGATGATTTGCAAAGAACAGTTTTTATAAGTAATCTTCCCTTTGAATGTGATAATGAAGAAGTCAAACAACGATTTTCTGGATTTGGGGACGTAGAATACTTTCTTCCTGTTCTCCACCAAGTGACCAAGCGACCAAGAGGGACTGGTTTTCTTAAGTTCAAAACGGTAGAAGCTGCTGAAACTGCAATTTCAACGGCTAGTGCTGCTTCTGGGATGGGTATTTTACTGAAGGGTAGACCATTAAAAGTTTTAAAGGCTTTGGACAAAAAATCAGCTCATGACAAGGAACTGGAGAAAGCAAAAAATGAGGTTCATGACCACCGTAATATTTACTTGGCAAAGGAAGGACTTATTCTTGAGGGAACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAAGAGTTGGAAAGGAAAAAGAAGACAAAGCTTCAATCTCCAAATTTTCATGTTTCAAGAACTAGACTTGTTATCTACAACATACCAAAGTCCATGACTGAAAAAGAACTAAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGATAAAGTTTTTGAAAGATGGAAAGAAAGGAAAGGTTTCTCAAGAACACCATTCACGTGGAGTTGCCTTTATTGAATTTTCGGAGCATCAACATGCCCTTGTGGCTCTGAGAGTTCTTAACAATAACCCTGAAACTTTTGGTCCTGAACATCGGCCTATTGTGGAGTTTGCTCTTGATAATGTTCAAACACTAAAACTTCGGAAGGCAAAGCTCCAATCTCAGCAGCAGGCTCCTCATGATGACATTGCCAAGGAAAATGACAAACCTGTCATAGCAGAAGTTCAGACACATAAGTCAAAGAATAACCGAGATGGCCATAATCATGGTGATGCATCTCTTGAAGGTCAAAACACTGGCATTGGCATTAGTGGAACAAAATCGGGAAACAAAGATAATGTTGGATTTAGAAAAAGGAAGATGCAAAACCAAGAAGAACAAGCAGGCCAAAAGGTTTCTAAGAAACGACCAAAGAAGAATAAAGATTCAGTAGGGAAGGACGTAGTAGATAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACACAAGGATTCCCAAGGGAATGATGGTGAGAAAAAAGCTTCTAAACAACTTAGAAAATGGTTCCAATCATAG 2694 0.402 MGKKNKLKENGGKEHCPLTIFVSNLPYSFSNSQLEETFSEVGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDANRAIEQKNGSSVGGRKIVVKQAMPRPPRDERQSKPNQVGKTDDLMKSENDKDDRLSGVEKPVSVLKEEEVLVSNKQKNSRKPLEMKKATLCNDVADEGGCSEKQRVARTVIFGGLVNSDMAEDVHRQAREIGTVCSIKYPLSRKDLEQNGLLQDGCILDASAVLYTSVKSARASVAVLHKKEIGGGIVWARQLGGEGSKTQKWKLIVRNLPFKAKENEIRDMFSSAGYVWDVFIPHRSDTGLSKGFAFVKFTCKLDAENAIQKLNGSKFEKRLIAVDWAVPKKIFSSDKNDALASETGQQKLRDDDSRATEDDVEHIDKQSCDGDDSNVDYSSAIEEEGCPSEDNFEKEADIARKVLNNLITSSTKGASVNNDSMCSKENKEPKSNEIVKDADSKASNESEKVSGVSKPEISGRSKLSNHKQTEEDDLQRTVFISNLPFECDNEEVKQRFSGFGDVEYFLPVLHQVTKRPRGTGFLKFKTVEAAETAISTASAASGMGILLKGRPLKVLKALDKKSAHDKELEKAKNEVHDHRNIYLAKEGLILEGTPAAEGVSASDMLKRQELERKKKTKLQSPNFHVSRTRLVIYNIPKSMTEKELKKLCIDAVISRATKQKPVIRQIKFLKDGKKGKVSQEHHSRGVAFIEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQSQQQAPHDDIAKENDKPVIAEVQTHKSKNNRDGHNHGDASLEGQNTGIGISGTKSGNKDNVGFRKRKMQNQEEQAGQKVSKKRPKKNKDSVGKDVVDKLDMLIEQYRSKFSHKDSQGNDGEKKASKQLRKWFQS 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi520g00010 897 Coils Coil 745 765 - -
Sebi520g00010 897 PANTHER RNA-BINDING MOTIF PROTEIN 14B 15 897 - -
Sebi520g00010 897 MobiDBLite consensus disorder prediction 822 843 - -
Sebi520g00010 897 CDD RRM4_RBM28_like 654 751 - -
Sebi520g00010 897 SUPERFAMILY RNA-binding domain, RBD 502 732 IPR035979 GO:0003676
Sebi520g00010 897 CDD RRM2_RBM28_like 276 352 - -
Sebi520g00010 897 MobiDBLite consensus disorder prediction 802 821 - -
Sebi520g00010 897 CDD RRM3_RBM28_like 502 583 - -
Sebi520g00010 897 Gene3D - 262 387 IPR012677 -
Sebi520g00010 897 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 654 762 IPR000504 GO:0003723
Sebi520g00010 897 CDD RRM1_RBM28_like 19 97 - -
Sebi520g00010 897 MobiDBLite consensus disorder prediction 370 397 - -
Sebi520g00010 897 MobiDBLite consensus disorder prediction 787 897 - -
Sebi520g00010 897 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 502 585 IPR000504 GO:0003723
Sebi520g00010 897 MobiDBLite consensus disorder prediction 94 131 - -
Sebi520g00010 897 MobiDBLite consensus disorder prediction 361 404 - -
Sebi520g00010 897 FunFam RNA-binding motif protein 28 653 748 - -
Sebi520g00010 897 SUPERFAMILY RNA-binding domain, RBD 19 261 IPR035979 GO:0003676
Sebi520g00010 897 MobiDBLite consensus disorder prediction 77 131 - -
Sebi520g00010 897 SMART rrm1_1 276 349 IPR000504 GO:0003723
Sebi520g00010 897 SMART rrm1_1 503 581 IPR000504 GO:0003723
Sebi520g00010 897 SMART rrm1_1 19 92 IPR000504 GO:0003723
Sebi520g00010 897 SMART rrm1_1 655 746 IPR000504 GO:0003723
Sebi520g00010 897 MobiDBLite consensus disorder prediction 850 891 - -
Sebi520g00010 897 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Sebi520g00010 897 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 353 IPR000504 GO:0003723
Sebi520g00010 897 FunFam Putative RNA binding ribonucleoprotein 430 599 - -
Sebi520g00010 897 Gene3D - 2 110 IPR012677 -
Sebi520g00010 897 Gene3D - 436 599 IPR012677 -
Sebi520g00010 897 Coils Coil 580 607 - -
Sebi520g00010 897 Gene3D - 653 748 IPR012677 -
Sebi520g00010 897 FunFam - 2 129 - -
Sebi520g00010 897 MobiDBLite consensus disorder prediction 449 470 - -
Sebi520g00010 897 MobiDBLite consensus disorder prediction 787 801 - -
Sebi520g00010 897 SUPERFAMILY RNA-binding domain, RBD 271 355 IPR035979 GO:0003676
Sebi520g00010 897 MobiDBLite consensus disorder prediction 440 497 - -
Sebi520g00010 897 MobiDBLite consensus disorder prediction 760 779 - -
Sebi520g00010 897 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Sebi520g00010 897 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 504 562 IPR000504 GO:0003723
Sebi520g00010 897 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 346 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi520g00010 Sebi-Chr520 120870 129237 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi520g00010 19 98 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 4.86e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi520g00010 K14573 - gmx:100794821 1323.53