Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi520g00009 ATGCAATGCTTGTGGTTTCTTATGAGTGATAGGATGAAGCCTTTTGCTGGAGGGAAAGATAGTGAACGCGGAGAAAAGAGGCATCGTGATGATGATTTTGACTTATTTGCCATTCCCGAATTATCAAAAGGGTTAAATACAAGAAATTTTGGAAGTAAGAGCAATGAAATAGAAGCTCTTTGTGCTAGAAGATCAAAATCCCTGAAACATGGCACTGTGATGAGTCCCAATTCTTCAGATGCTCATGTAGATGCACCTGTTAGACTTTATGAACAGTCAATACCAACAAAATGGCAAGTAAATCAGTTGTCACAAGGCAATGATGGCCATATTTTGCATGGTATTTCAGCAGTAGCATCACCTATTAATATAGATCATAGATCATATGATGGAGATAGCAGGCACAATCATCTTTATGGGAAGTCTAAGCAGAAAGAACCTGCTGGAAGAATTCCTATGAAAATCTTAATGGTGAAAGATGAAGAGGTTAATCGAAACTTTACTCCGGAAGGGGCTAGAGCTGGTGTTGGATATACCCCAATTGCTGAGAACGCAAAAGATGAAGGATGTGGTCATGATTATATATCGAAGGATGACATTGGCGAAGTATGTCGTGTTTGTGGAGTTATTAGGATGGGAATTGAATCCATCATCGAATATCCATCCATGAAGATCGTAATAATGGAAGATGCCATTCTATTTGCTTCCGAAAAGGGTGGTCTTCAAAAGCATGGAAAAAGGAGTTCACGAACTTATGTATCTGAGTCTCGAAATTCAAGTCACAAAGGATCAACCAAGATTTCACAAAGTAGATTTAAATTTTCTAGGGATGAATTAATGCCAACTGGACTTTCTCCTCATCCAAGGCACATGAAGCAAATGAAACTTCATCAGGTGGAGGGATTTAACTTTCTTTGTAGTAACCTCATAACAGATAATCCAGGGGGTTGCATTCTAGCTCATGCTCCAGGTTCTGGAAAGACCTTTATGGTTATAAGTTTTATGCAAAGTTACCTTGCTTCATCACCCGGTGCCAGACCACTAGTTGTTCTACCAAAAGGAATCTTAGCTACATGGAAGAAAGAGTTTCGAACATGGCAAGTGGAGGACATTCCATTATATGATTTTTACTCAGCAAAAGCAGATAGCCGGGCTCAGCAGTTGGAAGTTCTGAAGAAATGGGTGGAGCATAAAAGTATCCTATTTTTGGGCTATCAACAATTTTCTTCCATTATTTGTGACAATGAAAAAGAATCAGCAGTGTCAGAGTGTCAAGAAATACTATTGAGAGTCCCTACAGTGCTTTTTCTAGATGAAGGTCACACTCCAAGAAATGAGGACACTAATGTGCTTCATTCTCTTAAAAAAGTTCACACGCCTCTAAAAGTTTTATTGTCAGGAACTCTTTACCAAAACCATGTGAAAGAGGTGTTTAGTCTTGTGAAGCTTGTTCGACCAAAGTTCATGAGGTTAGAAACTACTTGTGATATACAAAGGCGCATAATGTCCAGAGTGTCAACATCACACACTTCAAAATATGTCCCAGAGGAGGTATTCTTTAACTCGGTGGAGAAGACACTACAAGATAAGGATGATTTCAAACAGAAGGCAGCTGTTGTACGTGATCTTCGTGAGATGACCAGCAAGATTCTTCATTACTATAAAGGTGACTCTCTTGATGACCTCCCTGGTCTTGTTGATTATACCTTGTTACTCAATCTTAGTTTAACACAGAAAAGTGAAGTTGAGAAGTTAAAACAGCTTGAACATTTCAAGAAAGCTTCTGTGGGAAGTCTCTTGTATGTACATCCACAACTGAAATCTTTGTCAGAAGAGTTATCCTCTAATCCGGAGAAGAGGTCCTCCTTTGATGATAAAAAGATGGATGCCATGGTGAAAAGCCTGATCCCAAGAGATGGAGTTAAAGCAAAGTTCTTCCTTAACATGTTGAACCTGTGTGAATCAGCTGGTGAGAAGCTTTTGGTATTTAGTCAGTATATCCTCCCCGTGAAACTCTTTGAGAGAATGTCAGTGCATTCCAAAGGGTGGAGTCGTGATAAAGAATTGTTCATGATAACTGGTGGTTCAAGCCATGAACATAGGGAATGGTCCATGGAACGTTTTAACAACTCTCCTGATGCTAAAGTCTTGTTTGGCTCAATAAAAGCTTGTGGGGAAGGAATTTCTTTAGTAGGGGCTTCACGCATTATCATATTAGATGTTCATCTTAACCCCTCAGTGACTAGACAGGCCATAGGGCGTGCATTTAGACCTGGTCAGAAGAGAAAAGTATACACATATAGGTTGATTGCTGCCGATTCACCTGAGGAGGACGATTATAAGACTTGCTTCAGAAAGGAGTCCATTGCAAAGATGTGGTTTGAGTGGAATGGGAACTTTGGGAACCAACAATTTGAAATGAAGGCCATTGATGTTAATGAATGTGGTGACCCTTTTCTGGAAAGTTTATCCTTGCGGGATGATATAAAGACCTTGTACACGAGGTAA 2508 0.3971 MQCLWFLMSDRMKPFAGGKDSERGEKRHRDDDFDLFAIPELSKGLNTRNFGSKSNEIEALCARRSKSLKHGTVMSPNSSDAHVDAPVRLYEQSIPTKWQVNQLSQGNDGHILHGISAVASPINIDHRSYDGDSRHNHLYGKSKQKEPAGRIPMKILMVKDEEVNRNFTPEGARAGVGYTPIAENAKDEGCGHDYISKDDIGEVCRVCGVIRMGIESIIEYPSMKIVIMEDAILFASEKGGLQKHGKRSSRTYVSESRNSSHKGSTKISQSRFKFSRDELMPTGLSPHPRHMKQMKLHQVEGFNFLCSNLITDNPGGCILAHAPGSGKTFMVISFMQSYLASSPGARPLVVLPKGILATWKKEFRTWQVEDIPLYDFYSAKADSRAQQLEVLKKWVEHKSILFLGYQQFSSIICDNEKESAVSECQEILLRVPTVLFLDEGHTPRNEDTNVLHSLKKVHTPLKVLLSGTLYQNHVKEVFSLVKLVRPKFMRLETTCDIQRRIMSRVSTSHTSKYVPEEVFFNSVEKTLQDKDDFKQKAAVVRDLREMTSKILHYYKGDSLDDLPGLVDYTLLLNLSLTQKSEVEKLKQLEHFKKASVGSLLYVHPQLKSLSEELSSNPEKRSSFDDKKMDAMVKSLIPRDGVKAKFFLNMLNLCESAGEKLLVFSQYILPVKLFERMSVHSKGWSRDKELFMITGGSSHEHREWSMERFNNSPDAKVLFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKRKVYTYRLIAADSPEEDDYKTCFRKESIAKMWFEWNGNFGNQQFEMKAIDVNECGDPFLESLSLRDDIKTLYTR 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi520g00009 835 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 183 834 IPR044567 GO:0080188
Sebi520g00009 835 MobiDBLite consensus disorder prediction 252 267 - -
Sebi520g00009 835 Pfam SNF2-related domain 313 581 IPR000330 GO:0005524|GO:0140658
Sebi520g00009 835 SMART helicmild6 676 759 IPR001650 -
Sebi520g00009 835 Pfam Helicase conserved C-terminal domain 646 758 IPR001650 -
Sebi520g00009 835 SMART ultradead3 290 500 IPR014001 -
Sebi520g00009 835 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 645 813 IPR001650 -
Sebi520g00009 835 CDD SF2_C_SNF 642 770 - -
Sebi520g00009 835 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 308 487 IPR014001 -
Sebi520g00009 835 MobiDBLite consensus disorder prediction 242 267 - -
Sebi520g00009 835 Gene3D - 563 821 IPR027417 -
Sebi520g00009 835 Gene3D - 261 528 IPR038718 -
Sebi520g00009 835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 493 IPR027417 -
Sebi520g00009 835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 797 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi520g00009 Sebi-Chr520 111690 116754 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi520g00009 656 787 RAD5 or RAD16-like Gene Family AT5G43530 34.848 1.81e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi520g00009 SNF2_N 5.4e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi520g00009 K10875 - qsa:O6P43_001867 864.759