LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi520g00006	ATGGGGAAGATAGAAAAATTACACATGAACTTAACACCACATTTTCTATCATCCTTGTCATCTTTGATGGCTATCCTCCTGGTCATTCTCTTGGCCTTGGCCTCACCTACATTTTCAGCTGGCCCTGCTTCTAACTTCATTCCTAAAGATAACTTCCTCATTGATTGTGGTGCTGAAAATGTAGCCACCCTCCCTGATGGAAGACAATTCAAATCAGACCCACAAGCCAATTCTTTCTTGCAAGCCAATGATGATTATAAAGTCTCAGCTAATGATGTGGATGTTCCTTCTCCTATTTACTCAAATGCAAGGATATTCATTCAGGAAGCTAAGTACTCCTTCCATTTGGTTCAACCAGGATTTCATTGGGTTCGCCTTCATTTCTTCCCTATTAAAAACAATGTTTTTGATCTTCAGAAGGCTACTTTCTCTGTCAACACAGATAAATTTGTCCTTCTCCACAGCTTCAATGTTAACAACACTGAAAAGGCAATCCTCAAGGAGTACCTCATCAATGCAACTGAACCCCATTTCACCTTATCCTTCATTCCCTTGAAAAACTCAGCTGCATTCATCAATGCCATTGAACTTGTTTCAGCTCCTGATAACCTGATCTTTGACAGTGGTGCCAGCCTTTTCCCTGTTGGGGAGTTTTCTGGCCTTACAGCTTTTGGTTTCCAACCTGTTTATAGGCTCAACAATGGAGGACCTATGATCACCCCATCAAATGACACCTTGGCAAGAACTTGGGAATCTGATGAGCCTTACCTCACAACAAGAACTTGGCAAAAGCCAAATTTCAATGTCTCATGGAAATTTGATGTGGACACTTCTTTTAGTTACCTCATTAGATTGCATTTCTGTGACATTGTAAGCAAAGGGCTTAATGAACTCTACTTCAATGTCTATGTTAATGGGAAAATGGCAATTTCTAACTTGGATTTGTCAGCTATTACTGGTGCCTTGTCAACCCCATATTACAAAGACATTGTAGTCAATGCAACATTGATGTCTCAAGGACTAACAGTTCAGGTTGGTCCAGCAAATGCTGATGGTGGAAATGCCAATGCCATTATGAATGGTATAGAGGTCTTGAAGATAAGCAACTCTGTGGATAGTTTGGATGGAGAATTTGGGGTTGATGGAAGAAGAATTGGTGGTTCTAACCGTGGGACAGTGGCAGCAGTTGGATTTGCCATGATGTTTGGAGCCTTTGTGGGACTTGGTGCTATGGTGATCAAGTGGCACAAGAGGCCTCAAGATTGGCAAAAGAGGAATAGCTTCTCTTCATGGTTACTTCCTTTACATGCTGGTGATACAAGCTTCATGAGCAGCAAAACCTCAATGGGAAAGAGCAACATCTACTCCTCATCAATGGGATTAGGCAGGTTTTTCTCCTTTTCAGAATTACAAGAAGCAACCAAGAACTTTGATTCCAAGAACATTATTGGTGTTGGTGGATTTGGTAATGTCTATTTGGGTGTGATTGATGAGGGGACTCAAGTGGCAGTCAAGAGAGGAAATCCACAATCAGAACAAGGAATCAATGAATTCCAAACTGAAATTCAAATGTTATCCAAGCTTAGACACAGGCATTTAGTGTCTTTGATTGGATACTGTGATGAGAATGATGAGATGATCCTTGTTTATGAGTACATGCCTAATGGACATTTCAGAGACCATCTTTATGGAAAGAACTTGCCATCACTTTCTTGGAAGCAAAGGTTAGAGATTTGCATTGGATCAGCTCGTGGTCTTCACTACCTTCACACAGGAACTACACAAGGTATCATCCACCGTGATGTTAAGACCACAAACATCTTACTTGATGAGAATTTCACAGCCAAAGTTTCTGACTTTGGACTTTCAAAGGATGCACCTATGGGCCAGGGTCATGTTAGTACAGCAGTGAAAGGTAGTTTTGGTTATCTTGACCCTGAGTACTTCAGGAGACAACAATTGACAGAAAAATCAGATGTATACTCATTTGGGGTGGTCCTTCTTGAAGCACTATGTGCAAGGCCAGCTATTAACCCTCAATTGCCTAGAGAACAAGTAAACTTGGCTGATTGGGCAATGCAATGGAAGAGAAAAGGGTTGCTTGACAAGATCATTGATCCTCTTCTTGTTGGTTCAATCAACCCTGAATCTATGAAGAAATTTGCTGAGGCTGCTGAGAAATGTTTGGCTGATCATGGTGTTGATAGGCCTTCAATGGGAGATGTACTTTGGAACTTGGAATATGCATTGCAGCTTCAAGAAGCATTCACACAAGGTAAGGCAGAGGATGAGATTAAGTCAACTGCAGCTGTTCCTACTTCACCTGCTCCAGTTCCAACACCTTCCTCTACCTCTGATGACACCCCAGTTTCACGTCCAGAAGTGAATAATAATAATAATAGTCCACCAGAAGTGCATGCTATTGATGACCATTCTGGAACTGCAATGTTTGCACAGTTTAATAATCTTAATGGCAGGTGA	2481	0.4131	MGKIEKLHMNLTPHFLSSLSSLMAILLVILLALASPTFSAGPASNFIPKDNFLIDCGAENVATLPDGRQFKSDPQANSFLQANDDYKVSANDVDVPSPIYSNARIFIQEAKYSFHLVQPGFHWVRLHFFPIKNNVFDLQKATFSVNTDKFVLLHSFNVNNTEKAILKEYLINATEPHFTLSFIPLKNSAAFINAIELVSAPDNLIFDSGASLFPVGEFSGLTAFGFQPVYRLNNGGPMITPSNDTLARTWESDEPYLTTRTWQKPNFNVSWKFDVDTSFSYLIRLHFCDIVSKGLNELYFNVYVNGKMAISNLDLSAITGALSTPYYKDIVVNATLMSQGLTVQVGPANADGGNANAIMNGIEVLKISNSVDSLDGEFGVDGRRIGGSNRGTVAAVGFAMMFGAFVGLGAMVIKWHKRPQDWQKRNSFSSWLLPLHAGDTSFMSSKTSMGKSNIYSSSMGLGRFFSFSELQEATKNFDSKNIIGVGGFGNVYLGVIDEGTQVAVKRGNPQSEQGINEFQTEIQMLSKLRHRHLVSLIGYCDENDEMILVYEYMPNGHFRDHLYGKNLPSLSWKQRLEICIGSARGLHYLHTGTTQGIIHRDVKTTNILLDENFTAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPQLPREQVNLADWAMQWKRKGLLDKIIDPLLVGSINPESMKKFAEAAEKCLADHGVDRPSMGDVLWNLEYALQLQEAFTQGKAEDEIKSTAAVPTSPAPVPTPSSTSDDTPVSRPEVNNNNNSPPEVHAIDDHSGTAMFAQFNNLNGR	826

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi520g00006	826	Pfam	Protein tyrosine and serine/threonine kinase	480	674	IPR001245	GO:0004672\|GO:0006468
	Sebi520g00006	826	Gene3D	-	227	369	-	-
	Sebi520g00006	826	Gene3D	-	51	201	-	-
	Sebi520g00006	826	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	597	609	IPR008271	GO:0004672\|GO:0006468
	Sebi520g00006	826	SUPERFAMILY	Protein kinase-like (PK-like)	460	744	IPR011009	-
	Sebi520g00006	826	ProSitePatterns	Protein kinases ATP-binding region signature.	483	505	IPR017441	GO:0005524
	Sebi520g00006	826	PANTHER	OS07G0166700 PROTEIN	463	753	IPR045272	GO:0004714\|GO:0006468
	Sebi520g00006	826	SMART	serkin_6	477	749	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi520g00006	826	CDD	STKc_IRAK	483	747	-	-
	Sebi520g00006	826	Pfam	Malectin-like domain	54	264	IPR024788	-
	Sebi520g00006	826	MobiDBLite	consensus disorder prediction	780	805	-	-
	Sebi520g00006	826	ProSiteProfiles	Protein kinase domain profile.	477	749	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi520g00006	826	FunFam	Putative receptor-like protein kinase	51	201	-	-
	Sebi520g00006	826	Gene3D	Phosphorylase Kinase; domain 1	439	552	-	-
	Sebi520g00006	826	FunFam	Receptor-like protein kinase FERONIA	553	766	-	-
	Sebi520g00006	826	FunFam	receptor-like protein kinase FERONIA	440	552	-	-
	Sebi520g00006	826	MobiDBLite	consensus disorder prediction	761	813	-	-
	Sebi520g00006	826	Gene3D	Transferase(Phosphotransferase) domain 1	553	771	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi520g00006	Sebi-Chr520	56868	59470	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi520g00006	44	826	Receptor kinase-like Gene Family	AT4G39110	66.187	0.0	1128

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Sebi520g00006		PK_Tyr_Ser-Thr	8e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi520g00006	-		-	gmx:100790759	1386.32