Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi51g00061 ATGGGAAATGGACAACTTTCCATGCATGGCTTAGGGCTACCGCGAGTGCCGGTAAAACCCGCCACCACTACTACTCCTTCCAATAAGGATACATGGGAAAAGCCTCGTGCAAGTGGCACCTTAGAGTCTATTGTAAACCAAGCCACTAGCTTACCCCACCACCGGAGCAAATCATCATCTTTTGTTGCCGCCGGTGGTGGTGTGTATGGGAACGTGTTAGTCCCATGGCTGGACCCTCACCGTGCTGCGGCTATCGCCGCCGCGGCAGCTTCGAACACGGTGACGATGGATGCGTTGGTGCCGTGTTCGAATCGGACGGAGGAGCAGAGTACGCAGGTCATGGATTCCATCCCAGGAGGACTTGGCACGTGCATGGTAGGTTGTTCCACACGTGTGGGGTCTTGTAGCGGTACGGCTACGCAGCAGGAGGAAGGGGCGTTACTTGCGGAGGCGGCAAAGCGTGCGAGGGTGCCAAACGTGCCGGTGAGTAGCAAGGATCAGAGTGTGAGTGGAAGCAGGCACGTGACACTTGACACGTGTGACAGAGAATTTGGTGTGGGTTTCACTTCCACCTCCATAGGGTCGTTGGAAAATACAAGCTCAGCAAAGCAGTGCACTAAGACCACCACTGTTGATGACCACGATTCTGTTTGCCATAGTAGACCAATGAGAGATGATGGGGAGGAGGAGGAGAAAAAGAGGGGAAATCGAAAATCTTCTGTGTCTACTAAAAGGAGCAGAGCTGCAGCAATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAGAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGTTGGATGAAGTGATAGAATATCTGAAACAGTTGCAAGCACAA 897 0.5128 MGNGQLSMHGLGLPRVPVKPATTTTPSNKDTWEKPRASGTLESIVNQATSLPHHRSKSSSFVAAGGGVYGNVLVPWLDPHRAAAIAAAAASNTVTMDALVPCSNRTEEQSTQVMDSIPGGLGTCMVGCSTRVGSCSGTATQQEEGALLAEAAKRARVPNVPVSSKDQSVSGSRHVTLDTCDREFGVGFTSTSIGSLENTSSAKQCTKTTTVDDHDSVCHSRPMRDDGEEEEKKRGNRKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQ 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi51g00061 299 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 299 IPR031066 -
Sebi51g00061 299 Gene3D - 242 299 IPR036638 GO:0046983
Sebi51g00061 299 MobiDBLite consensus disorder prediction 207 283 - -
Sebi51g00061 299 MobiDBLite consensus disorder prediction 1 39 - -
Sebi51g00061 299 SMART finulus 253 299 IPR011598 GO:0046983
Sebi51g00061 299 CDD bHLH_AtPIF_like 247 299 IPR047265 -
Sebi51g00061 299 MobiDBLite consensus disorder prediction 269 283 - -
Sebi51g00061 299 MobiDBLite consensus disorder prediction 250 267 - -
Sebi51g00061 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 247 296 IPR011598 GO:0046983
Sebi51g00061 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 245 299 IPR036638 GO:0046983
Sebi51g00061 299 Coils Coil 253 273 - -
Sebi51g00061 299 MobiDBLite consensus disorder prediction 208 237 - -
Sebi51g00061 299 MobiDBLite consensus disorder prediction 20 39 - -
Sebi51g00061 299 Pfam Helix-loop-helix DNA-binding domain 252 297 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi51g00061 Sebi-Chr51 2522108 2525075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi51g00061 3 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 53.872 3.83e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi51g00061 HLH 3.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi51g00061 - - ahf:112697399 388.652