Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi51g00046 ATGTTGGAGTACGAATGGGGTAATCCATCGACCATAACCCTCACCGGAAATGAAGGCGGCGCCGCCACAGAATCCGGCCAAACCCACCGACAAACCCTCAACCACAACTACAACTTGTTACCTAACCACCTGCTATCTCAACCCCAACCGCAACATGCTCCTACACCCACTACCACTAGTTTGTCTCACCAAAACCACTTCTACCCGCCAGAACTGTACCATCACCAGCACCACCCCTGTGACCCACGCGCTTTCACTGGCGCGTCCCCTACCTCTTACTCACCGCCACCATCCTCCCTTTACCCAATCCCACCCCTCAACGCGGCCCACTACAGGCCTGAGCCTGATCCCGAGCTTCTCAGTCGGCCTATAGACTTCATGGGCTCTAGGCTTCGGCTTAATCTTGGAGGCCGCATCTACTTTGCATCTTCCAATGATGACATCCCTAGTCGACTCTACCGTCCGTATAACTCATCGGTAGAGGTGAGTTGCACGGTATCATCAAACTCGCCGCGGTGCCAGGCGGAAGGTTGCAACGCGGACCTCTCCGACGCGAAGCATTATCACTGCCGCCACAAGGTCTGCGAGTTCCACTCGAAGGCCGCCATTGTCATCGCTGCCGGGTTGACTTAG 633 0.5592 MLEYEWGNPSTITLTGNEGGAATESGQTHRQTLNHNYNLLPNHLLSQPQPQHAPTPTTTSLSHQNHFYPPELYHHQHHPCDPRAFTGASPTSYSPPPSSLYPIPPLNAAHYRPEPDPELLSRPIDFMGSRLRLNLGGRIYFASSNDDIPSRLYRPYNSSVEVSCTVSSNSPRCQAEGCNADLSDAKHYHCRHKVCEFHSKAAIVIAAGLT 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi51g00046 210 MobiDBLite consensus disorder prediction 8 25 - -
Sebi51g00046 210 Pfam SBP domain 173 208 IPR004333 GO:0003677
Sebi51g00046 210 MobiDBLite consensus disorder prediction 42 66 - -
Sebi51g00046 210 Gene3D - 168 210 IPR036893 GO:0003677|GO:0005634
Sebi51g00046 210 ProSiteProfiles Zinc finger SBP-type profile. 170 210 IPR004333 GO:0003677
Sebi51g00046 210 MobiDBLite consensus disorder prediction 42 73 - -
Sebi51g00046 210 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 209 IPR044817 GO:0003677
Sebi51g00046 210 MobiDBLite consensus disorder prediction 1 25 - -
Sebi51g00046 210 SUPERFAMILY SBT domain 171 209 IPR036893 GO:0003677|GO:0005634
Sebi51g00046 210 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi51g00046 Sebi-Chr51 1972496 1973128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi51g00046 1 210 SBP-box Gene Family AT1G02065 39.207 2.70e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sebi51g00046 SBP 6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi51g00046 - - vun:114181599 214.542