Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi51g00027 ATGAACCTGAGCTACGAACAGAGGCTTCAGGCAGTTGCCAAAATCGTACTCAGTGAAGACGCACGCACTGGCGACGCGCCGCCTTGCGAGGAAGAGCTTGGGGTCAGGGCGACCCTCAAACCCCACCAGGTGGAAGGGGTTTCGTGGCTCATACGAAGGTATAAACTCGGCGTCAACGTCATCCTCGGGGATGAGATGGGACTGGGCAAGACATTGCAAGCTATCTCCTTCTTAAGCTATTTAAAAGTGTGTCGGCTGTCACTTGGGCCATTTTATGGTTGGGTGTCAGAGATAGTCAAATTTTCCCCTAAACTAGAAGTCTTCAAATATGTTGGTGATAAAGAATACAGGCGCAGTCTGCGCATGAAAATACATGAATATGTAACAAGGCAGTCATCAACACTCAATGTCATGTTGCCTTTTGATTTGCTGTTAACAACATATGACATTGCACTGATGGATAAGGATTTCCTTTGTCAAATACCATGGCAATATGCAATCATTGATGAAGCTCAAAGACTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCGCTATATCATGCCAAGGCGGTTGTTGATGACTGGCACGCCTATTCAGAACAACCTTTCTGAACTGTGGGCGTTGATGTATTTTTGCATGCCATCTGTCTTTGGTACACTGGATCAATTTCTTTCTACATTCAAGGACATCACTGATCTTACCTCAGTTCATAATTCTCCAAAGGTAAAGGAGCGACTTCAAATCCTGAGAAGTGTATTGGGAGCCTTTATGCTTCGACGTACCAAATCAAAGCTTGTGGAGTGTGGAAATTTAGTGCTGCCACCTCTTACTGAGACAACTGTGTTAGTACCCCTTGTCAGCCTGCAAAAAAAGGTCTACATGTCAATATTGAGGAAGGAACTTCCTAAGCTACTTGCACTATCTTCTGGAACATCAAATCATCAGTCACTACAAAATATTGTGATACAGCTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATTGAGCCCGAACCATATGAAGAAGGTGAACATCTGGTTCAGGCTAGTGGTAAACTATTGATTTTGGACCAACTTCTTCAGAAGCTGCATTGTTCTGGACACCGGGTTCTTCTTTTTGCTCAAATGACCCATACACTTGATATTTTACAGGATTTTTTGGAGCTACGGAAGTATTCTTATGAGCGTCTTGATGGATCAATTAGGGCTGAGGAACGATTTGCTGCAATAAGGAGTTTTAGTAGCTCATCATCTAATGTGGGCACGGATATTGAAACTGACCAAAATGGAGCTTTTGTTTTTATGATCTCAACAAGAGCTGGAGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCACAGGTGGACAAGCAAGCTTTGCAGAGAGCGCATAGAATTGGCCAGATGAACCACGTTTTGTGTATAAACCTTGTTACAGAACGTACAGTGGAGGAAGTAATTATGCGGAGGGCAGAAAGAAAATTGCAGCTGAGCCTCAATGTTATAGGTGATAATATTCTGGAACATGAAGATAAAGAAACATCTATAGTTGGAACAGGTGATTTGAAATCCATCATATTTGGGATACGGATGTTTGATCCCACTGAGATCAATGATGGAAAACACTGCGATATGGACTTATCAGAAATTAATGCTATGGCTGACAAGGTGATTGCTATGCGTGATCAACAAATATTTGACAAGGATGACAGGAAATTTGAGGTCAATCCAAGAAACTTTTCAAAAGTATATGATGTTAAGGAAGGAGGTTCTGCTTCTCTCTCTTGTGATCTTGATCTTGATGAGGCTTCATATCTTTCTTGGGTTAAAAAATTTGAGGAAGTGTCTAAATCAAGTTGTGACTCAATCATGGACTTGAGGAGCAGAAAGAACTTAGATGAAGAGAAGAGTCTAAAACTTGAGATTGCAAAGAAGAAGGCAGAGGAAAAGAAGCTGTCTAAGTGGGAAGCTCTTGGATACCATTCATTGAATGTGAAAGACCCTATCAGCCCACCAGATGGTGATATTACATCAGCTACCGGTTCTGTTCATTTTGTATACGGAGATTGTACAGCTCCATCAAACGTTTGTTCATCTGAACCTGCTGTAATATTCAGCTGTGTTGACACCTCTGGACATTGGGGCCACGGTGGAATGTTCAATGCACTGACCAAACTTTCTACGAGCATCAGGGATGCATATGAACGAGCTTCTGAACATGGAGACCTGCATCTTGGTGATCTCCATCTTGTAAGGCTTGAAGATGGCTGTGATGAACAAAATATGGATGGTAATGTTCCCAAAATGGTTGCTTTAGCTGTGGTTCAGTCTTATAATCCAAGGCGTAAAGTCCCTCGAAGTGAAATCTCACTTCTCCACTTGGAAAGCTGCTTATCAAAGGCAGCATTCTCAGCCGCTCAAAAGTCTGGGATGGCCGGATGGGCATTCAGGCATTGA 2502 0.4225 MNLSYEQRLQAVAKIVLSEDARTGDAPPCEEELGVRATLKPHQVEGVSWLIRRYKLGVNVILGDEMGLGKTLQAISFLSYLKVCRLSLGPFYGWVSEIVKFSPKLEVFKYVGDKEYRRSLRMKIHEYVTRQSSTLNVMLPFDLLLTTYDIALMDKDFLCQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDITDLTSVHNSPKVKERLQILRSVLGAFMLRRTKSKLVECGNLVLPPLTETTVLVPLVSLQKKVYMSILRKELPKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHCSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSSSSSNVGTDIETDQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTERTVEEVIMRRAERKLQLSLNVIGDNILEHEDKETSIVGTGDLKSIIFGIRMFDPTEINDGKHCDMDLSEINAMADKVIAMRDQQIFDKDDRKFEVNPRNFSKVYDVKEGGSASLSCDLDLDEASYLSWVKKFEEVSKSSCDSIMDLRSRKNLDEEKSLKLEIAKKKAEEKKLSKWEALGYHSLNVKDPISPPDGDITSATGSVHFVYGDCTAPSNVCSSEPAVIFSCVDTSGHWGHGGMFNALTKLSTSIRDAYERASEHGDLHLGDLHLVRLEDGCDEQNMDGNVPKMVALAVVQSYNPRRKVPRSEISLLHLESCLSKAAFSAAQKSGMAGWAFRH 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi51g00027 833 Pfam SNF2-related domain 56 337 IPR000330 GO:0005524|GO:0140658
Sebi51g00027 833 Pfam Helicase conserved C-terminal domain 358 482 IPR001650 -
Sebi51g00027 833 FunFam Putative helicase CHR10 275 586 - -
Sebi51g00027 833 SMART helicmild6 387 482 IPR001650 -
Sebi51g00027 833 SMART ultradead3 35 227 IPR014001 -
Sebi51g00027 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 568 IPR027417 -
Sebi51g00027 833 Gene3D Leucine Aminopeptidase, subunit E, domain 1 694 827 IPR043472 -
Sebi51g00027 833 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 219 IPR014001 -
Sebi51g00027 833 SUPERFAMILY Macro domain-like 698 822 IPR043472 -
Sebi51g00027 833 Gene3D - 14 275 IPR038718 -
Sebi51g00027 833 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 31 603 IPR031053 GO:0003678|GO:0006281|GO:0006338
Sebi51g00027 833 Gene3D - 276 582 IPR027417 -
Sebi51g00027 833 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 361 532 IPR001650 -
Sebi51g00027 833 CDD SF2_C_SNF 350 493 - -
Sebi51g00027 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 264 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi51g00027 Sebi-Chr51 635217 668956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi51g00027 25 519 RAD5 or RAD16-like Gene Family AT3G16600 23.288 3.00e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi51g00027 SNF2_N 5.8e-40 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi51g00027 K20092 - gmx:100797182 1312.75