Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi518g00026 ATGCAAGCAAATGATGGTGTTCTTGTTAAGGTGCTCTCTGTGGACCCTGGTTTCAATGATGATGTGTTGGGGTTGATTGTCTTCAAGGCTGGTTTGCAAGACCCAAAGCATAGATTGTCTTCATGGAATGAAGATGATAACAGTCCTTGCAACTGGGAAGGTGTCAAATGTGATCCTTTATCCAACAGGGTCTCTGCTCTTGTCCTTGATGGGTTTTCTCTTTCTGGGCATGTTGATAGAGGCCTCTTGAGATTGCAATTCCTTCAAATTCTCTCACTTTCTGGGAATAACTTCACAGGCCCCATAAACCCTGATCTTCCTCGCCTTGGGAGTTTGCAAGTTGTTGACTTGAGTGATAACAATCTCTCTGGGACAATCCCAGAAGGGTTTTTCCAACAATGTGGGTCTCTGAGAGCAGTTTCCTTTGCAAAGAACAACCTTACAGGTAAGATTCCTGATTCCTTGAGCTACTGCTCTTCATTGACAACTGTTAACTTCTCCTCTAATAAGCTTTATGGGGAATTGCCATCTGGGGTGTGGTACTTGAGGGGTCTACAGTCACTTGATCTGTCAAATAACTTGCTTGAGGGAGTGATTCCTGAAGGAATTCAAAATCTGTATGATATGAGGGAATTGAGTCTACAGAAGAATAGATTCACTGGCAAGCTTCCTGGGGATATTGGAGGCTGCATACTTTTGAAATCACTTGACTTGAGTGATAATTTTCTCTCTGGGGAACTGCCTCATTCAATGCAAAGACTCACTTCATGCACCTCACTCAGTTTGCAGGGAAATTCATTCATAGGAGGCATTCCTGACTGGATTGGAGAGTTGAAAGATCTAGAAATAATGGACCTTTCTGCAAATAGATTTTCTGGTTGGATTCCAAAGTCTTTAGGAAATCTAGAATCACTGCATAGATTAAATTTATCCAGGAATCAGTTCACAGGAAACTTGCCTGATTCAATGGTCTTAAATATGTCCACCAACAATATCTCTGGTTCTATTCCTGTGGGCATAGGAGAACTTAAATCTTTATACATTGTTGACTTGAGTGACAACAAGCTTAATGGAAGCATCCCATCTGAAATAGAAGGTGCAATTTCACTCAGTGAACTGAGGCTACAAAAGAACTTCCTAAGTGGGAGAATTCCAGCTCAAATTGAAAAGTGTTCATCTCTAACATCTTTGATTGTTTCTCACAACAAGCTTAGTGGTTCAATCCCTGCAGCCATTGCAAACCTAACCAATCTTCAGTATGTAGATTTGTCATGGAATGAACTCTCTGGAAGTCTACCCAAGGAACTGACAAATCTTTCCCATCTTTCATCATTTAATGTATCTTACAACCACCTTGAAGGTGAGCTACCAGTAGGTGGCTTCTTCAATACTATATCCTCATCATCTGTCTCTGGTAACCCATTGTTGTGTGGTTCTGTTGTCAACCAGTCTTGCCCATCTGTTCATCCCAAACCTATTGTCTTAAATCCCAATTCTTCAGGTTCCAACTCAAGCATTTCCTCACAAAATCATCGACACAAGATCATACTCAGTATCTCTGCTCTTATTGCTATTGGAGCAGCTGCTTTTATTGCCATTGGTGTGGTGGCTATTACTGTCCTAAATATGCATGTGCGTTCATCCATGGCTCCTGCTGCTGCTCCATTTGCATTCTCTGGTGGTGAGGACTACAGCAATTCGCCGGCGAATGATCCAAACTATGGCAAGCTTGTCATGTTTGATGGTGATGCAGACTTTGCTGATGGAGCTCATAATCTTCTTAATAAAGACAGTGAAATAGGACGCGGTGGATTCGGAGTTGTTTATCGCACTTTCCTTCGAGATGGTCATTCAGTTGCAATCAAGAAGCTCACAGTCTCTAGTTTGATCAAGTCTCAAGAAGACTTTGAGAGGGAAGTGAGGAAGCTTGGGAAGATCAGGCACCAAAATCTTGTGGCACTTGAAGGTTATTACTGGACTTCATCCTTGCAGCTTCTCATTTATGAGTACCTATCCAAAGGGAGTTTGCATAAGCTTCTACATGATGAACATAATAGCCAAAATGTGTTCTCTTGGAGACAAAGGTTCAAGATTATTCTTGGCATGGCAAAAGGGTTGGCTCATTTGCATCAAATGAACATAATCCACTACAATCTTAAATCAACCAATGTTCTGATTGATTGTTCTGGTGAGCCAAAAATAGGAGATTTTGGCTTGGTGAAACTATTGCCAATGCTAGATCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGATACATGGCACCTGAATTCGCGTGCCGCATGGTTAAGATAACTGAGAAATGTGATGTGTATGGTTTTGGAATCCTGGTTCTTGAAGTAGTGACAGGAAAAAGACCAGTGGAATACATGGAGGATGATGTGGTAGTTCTGTGTGACATGGTGAGGGGTGCATTAGAGGAAGGAAAGGTGGAACAATGTGTTGATGGGAGGCTACTTGGAAATTTTGCTGCAGAGGAAGCAATTCCTGTGATAAAATTGGGGTTAATTTGTGCATCACAAGTGCCATCAAACCGTCCTGATATGGCTGAAGTGATCAACATATTAGAGTTAATCCAGTGTCCTTCAGAAGGGCAAGAGGAATTAGAATGA 2637 0.4164 MQANDGVLVKVLSVDPGFNDDVLGLIVFKAGLQDPKHRLSSWNEDDNSPCNWEGVKCDPLSNRVSALVLDGFSLSGHVDRGLLRLQFLQILSLSGNNFTGPINPDLPRLGSLQVVDLSDNNLSGTIPEGFFQQCGSLRAVSFAKNNLTGKIPDSLSYCSSLTTVNFSSNKLYGELPSGVWYLRGLQSLDLSNNLLEGVIPEGIQNLYDMRELSLQKNRFTGKLPGDIGGCILLKSLDLSDNFLSGELPHSMQRLTSCTSLSLQGNSFIGGIPDWIGELKDLEIMDLSANRFSGWIPKSLGNLESLHRLNLSRNQFTGNLPDSMVLNMSTNNISGSIPVGIGELKSLYIVDLSDNKLNGSIPSEIEGAISLSELRLQKNFLSGRIPAQIEKCSSLTSLIVSHNKLSGSIPAAIANLTNLQYVDLSWNELSGSLPKELTNLSHLSSFNVSYNHLEGELPVGGFFNTISSSSVSGNPLLCGSVVNQSCPSVHPKPIVLNPNSSGSNSSISSQNHRHKIILSISALIAIGAAAFIAIGVVAITVLNMHVRSSMAPAAAPFAFSGGEDYSNSPANDPNYGKLVMFDGDADFADGAHNLLNKDSEIGRGGFGVVYRTFLRDGHSVAIKKLTVSSLIKSQEDFEREVRKLGKIRHQNLVALEGYYWTSSLQLLIYEYLSKGSLHKLLHDEHNSQNVFSWRQRFKIILGMAKGLAHLHQMNIIHYNLKSTNVLIDCSGEPKIGDFGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRMVKITEKCDVYGFGILVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGKVEQCVDGRLLGNFAAEEAIPVIKLGLICASQVPSNRPDMAEVINILELIQCPSEGQEELE 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi518g00026 878 PRINTS Leucine-rich repeat signature 185 198 - -
Sebi518g00026 878 PRINTS Leucine-rich repeat signature 415 428 - -
Sebi518g00026 878 PANTHER LEUCINE RICH REPEAT KINASE 2 163 866 - -
Sebi518g00026 878 Pfam Protein kinase domain 595 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi518g00026 878 Gene3D Phosphorylase Kinase; domain 1 585 670 - -
Sebi518g00026 878 SUPERFAMILY Protein kinase-like (PK-like) 596 868 IPR011009 -
Sebi518g00026 878 SMART LRR_typ_2 278 301 IPR003591 -
Sebi518g00026 878 SMART LRR_typ_2 182 205 IPR003591 -
Sebi518g00026 878 SMART LRR_typ_2 302 326 IPR003591 -
Sebi518g00026 878 SMART LRR_typ_2 439 463 IPR003591 -
Sebi518g00026 878 SMART LRR_typ_2 109 133 IPR003591 -
Sebi518g00026 878 SMART LRR_typ_2 206 230 IPR003591 -
Sebi518g00026 878 SMART LRR_typ_2 415 438 IPR003591 -
Sebi518g00026 878 SMART LRR_typ_2 343 367 IPR003591 -
Sebi518g00026 878 SUPERFAMILY L domain-like 19 255 - -
Sebi518g00026 878 Gene3D Ribonuclease Inhibitor 132 209 IPR032675 -
Sebi518g00026 878 Pfam Leucine rich repeat N-terminal domain 19 58 IPR013210 -
Sebi518g00026 878 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 671 873 - -
Sebi518g00026 878 FunFam Leucine-rich repeat receptor-like protein kinase PXC2 322 488 - -
Sebi518g00026 878 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 19 297 - -
Sebi518g00026 878 Pfam Leucine rich repeat 183 241 IPR001611 GO:0005515
Sebi518g00026 878 Pfam Leucine rich repeat 369 428 IPR001611 GO:0005515
Sebi518g00026 878 Pfam Leucine rich repeat 111 171 IPR001611 GO:0005515
Sebi518g00026 878 Pfam Leucine rich repeat 258 315 IPR001611 GO:0005515
Sebi518g00026 878 Gene3D Ribonuclease Inhibitor 22 131 IPR032675 -
Sebi518g00026 878 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 588 670 - -
Sebi518g00026 878 Gene3D Ribonuclease Inhibitor 210 488 IPR032675 -
Sebi518g00026 878 CDD STKc_IRAK 600 867 - -
Sebi518g00026 878 ProSiteProfiles Protein kinase domain profile. 594 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi518g00026 878 SUPERFAMILY RNI-like 175 464 - -
Sebi518g00026 878 Gene3D Transferase(Phosphotransferase) domain 1 671 871 - -
Sebi518g00026 878 ProSitePatterns Protein kinases ATP-binding region signature. 600 623 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi518g00026 Sebi-Chr518 533679 536901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi518g00026 14 875 Receptor kinase-like Gene Family AT5G01890 59.368 0.0 1060
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Sebi518g00026 Pkinase 6.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi518g00026 - - gmx:100813535 1158.28