Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi518g00009 ATGGCTTCTCTGCTTCCTACAACTGCAACTACTTCACTTCAACATACTCACACAATCTATTTCTCTGCTCTGAAACCCACCACCCCAAATATTTCTTTCTTATCTAACCGTTTCAAGAGTAATAACTCTTCAAAGTGCAGTGCTTTTTTTGATAACATCCCCAAAGACTTGTTGGATAACACTTTGTATGTGGACCAATTTCCTGTATTCCGATCAGTGTTACTGAAGTTTCAGAGTGTAAGTGAGGACTTATCAGACATTCAGAGATGGGGGTTTGTGATTTTTGCTGCCATGACATGGTTTTACTTAACTGCAAGGCCAGGTGTTCTTGTTGGAGCCATTGATGCATTCCTTTTGGCTCCAATGCAACTGGTTTTGGACAGTTTAGCTGGAAGGAGAAATCTGAAGAGGAAAGATTTTCTGATTGGAGATAAGCTAGGTGAAGGATCATTTGGTGTTGTTTATTCAGGTGTTTTGGTCCCAAAGAATGTAGATGTAGAAGAGAGGATGCAGATGAGTGGAAGAGGCAAGGTGACAAAATTGGATGCCAAATCTAAGGATAAAGTCATTCTTAAAAAGGTAAAGGTTGGAATTGAAGGGGCTGAAGAATTTGGTGATTTTGAGGAGTGGTTCAATTATAGACTCTCTAGAGCAGCTCCTGAAACATGTGCCAAGTTCCTTGGAAGTTTTGTAGCTGATAAAAGCAATTCACAGTTCACAAAAGGGGGAAAATGGCTTGTTTGGAAGTTTGAGGGAAACCGCTCTCTTGCTGATTACATGGCAGATAGGAACTTCCCTTCAAACATAGAGTCTGTCATGTTTGGAAATGTCTTGCAAGGTGTAGACTCTTCTAAACGAAATGCATTAATCATCAAGCAGATAATGCGGCAGATCATTACATCTCTTAAGAAAATTCACAACACAGGCATTGTTCACAGGGATGTAAAGCCTGCTAACTTGGTGGTTACCAAATTGGGGCAGATCAAGCTCATTGATTTTGGTTCAGCAACAGACCTGAGGATTGGAAAGAATTATGCTCCCAATTGTAACCCTTTGGATCGTGACTACTGTCCACCTGAACTGTATGTGTTGCCAGAAGAAACATCAAGCCTTCCACCAGAGCCAATTGCAGCTTTACTTTCACCAATCTTGTGGCAGTTAAACAGTCCTGATCTGTTTGATATGTATTCTGCTGGGATTGTACTCTTGCAAATGGCTATACCAACCTTAAGGTCTCCAGCTGCTTTGAAGAATTTCAATTTGGAATTAAGAACATATGGATATGATTTGAACAAATGGAGGGACTCTACTCGCATGAGGTCTGATTTCCAAATCCTTGATAGTGACTCTGGTAGAGGGTGGGACTTAGCAACAAAGCTTATTTCCAAAAGAGGTTCCCAAAGAAGAGGACGTTTATCTGCTTCTGCTGCTTTGAGGCATCCTTATTTCCTTCTAGGTGGTGATCAGGCAGCTGCAGTCCTTTCAAAGTTAAGCTTAAGCACAAATTGA 1509 0.4095 MASLLPTTATTSLQHTHTIYFSALKPTTPNISFLSNRFKSNNSSKCSAFFDNIPKDLLDNTLYVDQFPVFRSVLLKFQSVSEDLSDIQRWGFVIFAAMTWFYLTARPGVLVGAIDAFLLAPMQLVLDSLAGRRNLKRKDFLIGDKLGEGSFGVVYSGVLVPKNVDVEERMQMSGRGKVTKLDAKSKDKVILKKVKVGIEGAEEFGDFEEWFNYRLSRAAPETCAKFLGSFVADKSNSQFTKGGKWLVWKFEGNRSLADYMADRNFPSNIESVMFGNVLQGVDSSKRNALIIKQIMRQIITSLKKIHNTGIVHRDVKPANLVVTKLGQIKLIDFGSATDLRIGKNYAPNCNPLDRDYCPPELYVLPEETSSLPPEPIAALLSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSPAALKNFNLELRTYGYDLNKWRDSTRMRSDFQILDSDSGRGWDLATKLISKRGSQRRGRLSASAALRHPYFLLGGDQAAAVLSKLSLSTN 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi518g00009 502 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 47 501 - -
Sebi518g00009 502 Gene3D Transferase(Phosphotransferase) domain 1 281 485 - -
Sebi518g00009 502 Pfam Protein kinase domain 290 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi518g00009 502 SMART serkin_6 140 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi518g00009 502 Gene3D Phosphorylase Kinase; domain 1 127 250 - -
Sebi518g00009 502 ProSiteProfiles Protein kinase domain profile. 140 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi518g00009 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Sebi518g00009 502 SUPERFAMILY Protein kinase-like (PK-like) 136 484 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi518g00009 Sebi-Chr518 160040 163062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi518g00009 140 339 MAP Kinase Kinase Kinase AT3G13530 25.616 9.85e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Sebi518g00009 Pkinase 1.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi518g00009 - - gmx:100795624 821.231