Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi517g00042 ATGGGCGTCGACATGTCCAACAAACCACCTCCAACTTCTCACACCAAGGACTTGTTTGCCTCTCCAGCTCTCTCTCTCAGCCTTGCTGGGATTTTCCGGCATACGGGGGAGGCGGTGGAGACGTCAATCGCGGGGGGAAGTAGAGGTGGCCGGCGAGAGGACACCGTTGAGATTAGCAGCGAGAATTCAGGGCACACGAGAAACAAGCTTTTCAAAGAATCACCACACCCTGATGAAAAGCAGAGACAACAACTAAGCAAGCAATTAGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAGTCAAGGCAATTCAAGAGCGCCATGAAAATTCATTGTTGAAGACAGAATTAGAGAAACTAAGGGAAGAAAATAGGGCCATGCGAGAGGCCATAAACAAATCTTGTTGCCCCAGCTGTGGCATGGCCACAACTAACATAGATGGTTCCATGTGCACCGAAGAAAAACAACTTCGTATTGAAAATGCCTTACTCAAAGCTGAGGTAGAGAAGCTTCGAGCAGCCTTAGGGAAATACCCACAAGGGACAACGTCCCCATCATGTTCTGGTGGCCATGATGACGAAGAGAATAGAAGCTCTTTGGAATTTTACACTGGAATTTTTGGGCTTGAGAAGTCAAGTATAATGGAGGCAGTGAAGCAAGCAACGGATGAGCTCATAAAGATGGCGAATATGAAGGACCCATTGTGGGTTCGTAGCATTGAGACAGGTCGCGAAATACTTAACTATGATGAATATTTGAAGAAGTTCGGAGCAGGAAATTCATGCAGTGCTAGTCCAAAGAGATTCATTGAGGCCTCAAGAGAGTCTCGGGTTGTTTTTGTGGATCTCCCTCGGCTTCTCCAAACTTTTCTAGATGTGAATCAATGGAAGGAAATGTTTCCGTGTTTGATATCAAAGGCAGCAACTGTTGATGTTATATGCAATGGAGAAGGTTCTAATAGGAATGGTGCAGTGCAATTGATGTTTGCTGAGTTGCAAATGCTGACTCCAATGGTGCCCACCAGAGAAGTATATTTTGTCAGGTGTTGCAAACAGCTAAGTGATGAAGAGTGGGCAATCGTTGATGTATCCATAGACAAAGTAGAAGACAACATTGACGCACCCCTTGTGAAATGTAGAAAACGCCCATCTGGTTGCATTATTGAGGATCTGTCAAATGGACATTGCAAGGTAACTTGGGTGGAGCACTTGGAATGCCAGAAGAGCACAATTCATACAATGTATCGAACCATTGTCAACAGTGGACTAGCCTTTGGGGCAAGGCATTGGATTGCAACACTGAAACATCAATGTGAACGTCTAGTTTTCTACATGGCAACCAATGTTCCCACGAAGGATTCAACTGGTGTTGCCTCATTGGCTGGAAGGAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGCCATGCAGTTGGAGCTTCAAGCTTCCACACATGGACCAAGGTCACTAGTAAAACGGGGGATGACATAAGGATTAGTTCAAGGAAGAACTTGAATGATCCTGGTGAACCTCTTGGGGTTATCTTGTCAGCAGTTTGTTCTGTATGGCTTCCTGTCTCTCCTAATTGGGATATCATGTTCAGTGGCTGGTCAGTGCAGTCCATGGTAAATTTAGCTAAAGGAAAAGACCAAGGAAATGTTGTAAATATCCAAAAAATACAATCAAAAGAAGACAGTATGTGGATACTACAAGATAGCTGCACAAATGCTTACGAATCAATGGTGGTATATGGTCCTGTGGACTTTACTGGTATCCAGTCTGTGCTGACAGGATGTGATTCAAGTAATCTTGCAATATTGCCATCAGGATTCTCAATTCTTCCTGATGGGGCAGAGGCAAGGCCATTGGTGATCACTTCAAGGCAGGAAGAAAAATGTACAGAAGGAGGGTCTTTATTGACAATGGCATTCCAGATCCTTGCCAATGCTTCTCCAACGGCCAAGTTAACAATGGAATCTGTGGATTCGGTCAAGAATCTAGTGTCTTGTACATTGAGAAATATCAGAACAAGTTTACAATGTGAAGATGATTAG 2082 0.4419 MGVDMSNKPPPTSHTKDLFASPALSLSLAGIFRHTGEAVETSIAGGSRGGRREDTVEISSENSGHTRNKLFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQVKAIQERHENSLLKTELEKLREENRAMREAINKSCCPSCGMATTNIDGSMCTEEKQLRIENALLKAEVEKLRAALGKYPQGTTSPSCSGGHDDEENRSSLEFYTGIFGLEKSSIMEAVKQATDELIKMANMKDPLWVRSIETGREILNYDEYLKKFGAGNSCSASPKRFIEASRESRVVFVDLPRLLQTFLDVNQWKEMFPCLISKAATVDVICNGEGSNRNGAVQLMFAELQMLTPMVPTREVYFVRCCKQLSDEEWAIVDVSIDKVEDNIDAPLVKCRKRPSGCIIEDLSNGHCKVTWVEHLECQKSTIHTMYRTIVNSGLAFGARHWIATLKHQCERLVFYMATNVPTKDSTGVASLAGRKSILKLAQRMTWSFCHAVGASSFHTWTKVTSKTGDDIRISSRKNLNDPGEPLGVILSAVCSVWLPVSPNWDIMFSGWSVQSMVNLAKGKDQGNVVNIQKIQSKEDSMWILQDSCTNAYESMVVYGPVDFTGIQSVLTGCDSSNLAILPSGFSILPDGAEARPLVITSRQEEKCTEGGSLLTMAFQILANASPTAKLTMESVDSVKNLVSCTLRNIRTSLQCEDD 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi517g00042 693 Gene3D - 68 109 - -
Sebi517g00042 693 Coils Coil 109 139 - -
Sebi517g00042 693 CDD homeodomain 69 108 IPR001356 GO:0003677
Sebi517g00042 693 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 67 688 IPR042160 -
Sebi517g00042 693 SMART HOX_1 50 114 IPR001356 GO:0003677
Sebi517g00042 693 Pfam START domain 226 446 IPR002913 GO:0008289
Sebi517g00042 693 ProSiteProfiles START domain profile. 213 449 IPR002913 GO:0008289
Sebi517g00042 693 Pfam Homeodomain 68 108 IPR001356 GO:0003677
Sebi517g00042 693 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Sebi517g00042 693 SUPERFAMILY Bet v1-like 215 446 - -
Sebi517g00042 693 ProSiteProfiles 'Homeobox' domain profile. 69 110 IPR001356 GO:0003677
Sebi517g00042 693 SMART START_1 222 446 IPR002913 GO:0008289
Sebi517g00042 693 MobiDBLite consensus disorder prediction 42 82 - -
Sebi517g00042 693 Coils Coil 160 180 - -
Sebi517g00042 693 SUPERFAMILY Homeodomain-like 69 115 IPR009057 -
Sebi517g00042 693 SUPERFAMILY Bet v1-like 476 681 - -
Sebi517g00042 693 CDD START_ArGLABRA2_like 217 445 - -
Sebi517g00042 693 FunFam Homeobox-leucine zipper protein GLABRA 2 222 445 - -
Sebi517g00042 693 MobiDBLite consensus disorder prediction 50 82 - -
Sebi517g00042 693 Gene3D - 281 446 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi517g00042 Sebi-Chr517 624769 630029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi517g00042 44 692 Homeobox Transcription Factor Family AT1G79840 61.103 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi517g00042 START 5.4e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi517g00042 K09338 - gmx:100806193 1116.68