Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi517g00033 ATGGGTCATCAGGAACCGGCGAAGCTGCGGTGGGGTGAATTGGAAGAGGACGACGGCGAGGATCTTGACTTCTTGCTGCCGCCTCGCCAAGTGATAGGCCCCGACGAGAATGGAATAAAGAAAGTCATCGAATACAAGTTCGACGACGACGGCAACAAGGTCAAGATAACCACCACCACGCGCACCCGCAAGCTCGCCAACGCCCGCCTCAGCAAACGCGCCGTCGAACGCCGCTCCTGGCCCAAGTTCGGCGACGCCGTCCACGAAGATGTCGGCAGCCGCCTCACCATGGTCTCCACCGAAGAGATTCTCCTCGAACGCCCCAAGCCTCTTGGTGAAAGTGTTAGAGTTGACCTCGATGTCTGTAGTTTAGGTGCCAAAACAGAGGAGCCAAAGGCTTCTGACCCGTTGGCTCAATTCCAAAAAGGTGCTGTTCTTATGGTCTGCAGGACTTGTGGGAAGAAGGGTGACCATTGGACTTCGAGGTGTCCGTACAAGGATCTTGCCCAGCCATCTGAGGGATTTGTGGATAAGCCTGCTGCAGCGGATGTTGGGGCTGCTGCAACTGGTTCGACCAAGGGAGCATATGTACCTCCTGGCATGAGAGCAGGCGCGGAGAGGACTGGATCAGACATGCGGCGCAGGAATGATGAAAATTCTGTGCGGGTAACTAATCTCTCAGAGGACACAAGGGAGCCTGATTTGCTTGAGTTGTTCCGTCCATTTGGTCCTGTAAGCAGAGTCTATGTTGCTATTGATCAGAAGACTGGGAGTAGCAGGGGTTTTGGTTTTGTTAACTTTGTCAGCAGGGAAGATGCACAAAGAGCTATCAACAAACTGAATGGATATGGCTATGACAATCTCATCCTGAGAGTTGAATGGGCTACTCCAAGGGCAAACTGA 903 0.5327 MGHQEPAKLRWGELEEDDGEDLDFLLPPRQVIGPDENGIKKVIEYKFDDDGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVHEDVGSRLTMVSTEEILLERPKPLGESVRVDLDVCSLGAKTEEPKASDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAQPSEGFVDKPAAADVGAAATGSTKGAYVPPGMRAGAERTGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGPVSRVYVAIDQKTGSSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRAN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi517g00033 300 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 8 299 IPR017334 GO:0003743|GO:0005737|GO:0005852
Sebi517g00033 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 287 IPR000504 GO:0003723
Sebi517g00033 300 CDD RRM_eIF3G_like 220 295 IPR034240 -
Sebi517g00033 300 MobiDBLite consensus disorder prediction 190 218 - -
Sebi517g00033 300 Pfam Eukaryotic translation initiation factor 3 subunit G 30 168 IPR024675 -
Sebi517g00033 300 SMART rrm1_1 220 293 IPR000504 GO:0003723
Sebi517g00033 300 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 15 296 - -
Sebi517g00033 300 FunFam Eukaryotic translation initiation factor 3 subunit G 184 300 - -
Sebi517g00033 300 PIRSF Transl_init_eIF-3_RNA-bind 2 300 IPR017334 GO:0003743|GO:0005737|GO:0005852
Sebi517g00033 300 Gene3D - 191 300 IPR012677 -
Sebi517g00033 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 297 IPR000504 GO:0003723
Sebi517g00033 300 SUPERFAMILY RNA-binding domain, RBD 217 299 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi517g00033 Sebi-Chr517 523271 524519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi517g00033 3 298 Eukaryotic Initiation Factors Gene Family AT3G11400 69.304 1.96e-152 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi517g00033 K03248 - gmx:100776807 525.013