Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi517g00015 ATGCCGCTACGGCGTAGCGGAGTGCGCAGGGGCCGGGCAGCAGCGAAGAAGGAAGAACAGAGTCCGCCGGCGGCGGCGGTGAATGAGAACCTAGTTGCTCCGCCTAAGAAAGAAGAAAAGAATCGAGGGTTGGAGGAAGCTGGTGGAGCGGAGAAGGAAGAGGTAGGGGAGAAACAAATGGATGATATTGACAGTGGAGGTCGCAGCAATGATAAGGCCAATGCCGGTGAAGATGATGGGAACGCTTGTTCGCTTCCTGAAAAGGTTCAAGTAGGTAATTCCCCTTGGTATAAAGTAGAAAGGAAACTTGGCAAGGGTGGATTTGGTCAGGTATATGTTGGTCGACGTGTTTCTGGTGCAAATTTGAGTGAGAGAACTGGACCTGGAGCGGTAGAGGTTGCAATGAAATTTGAGCATAAAAGTAGTAAAGGATGTAACTATGGACCACCCCATGAATGGCAAGTGTACAACACTCTTGGTGGAAGTCATGGTGTACCCCAAGTACATTACAAGGGCAAGCAAGGTGACTATTTTATCATGATTATGGATATGCTGGGACCTAGCTTGTGGGATGTTTGGAACAACAACTCTCACACCATGTCCACTGAAATGGTTGCTTGTATCGCCATCGAAGCAATATCCATATTAGAGAAGATGCACTCTCGAGGGTATGTGCATGGGGATGTGAAGCCTGAAAATTTTCTGCTTGGTGCTCCTGGGACACCTGATGAGAAAAAATTGTTCCTTGTAGATCTTGGATTAGCTACAAAATGGCGGGATAGTACAACAGGTTTGCATGTGGAATATGATCAAAGGCCAGATGTTTTTAGGGGCACAGTCCGCTATGCTAGTGTACATGCACACTTGGGGAGAACTAGTAGCAGGAGGGATGATTTGGAATCTCTTGCATATACTCTGATTTTTCTTCTTCGAGGTCGACTTCCTTGGCAGGGATTCCAGGGTGATAACAAAGGATTTCTGGTTTGCAAGAAGAAGATGGGAACAAGTCCAGATGTCCTATGCAGCTTTTGTCCCCAACCTTTTAAATTGTTTGTTGAGCATGTAGTGAACTTAAAGTTTGATGAAGAGCCTAACTATCCGAAATACATTTCTCTATTTGATGGGATTGTGGGTCCAAACCCAGATATTAGGCCAATTAATACAGAAGGTGCACAAAAGCTCATTGGTCATAAGAGAGGCCGTTTGGCAATGGAAGAGGAAGATGATGAACAACCCAAAAAGAAGTTTCGTATGGGTTTGCCAGCATCCCAGTGGATAAGTGTTTATAATGCTCGTAAACCGATGAAACAAAGGTATCACTACAATGTATCAGAGACAAGGCTATCCCAGCACATTGAGAAAGGAAACGAGGATGGCTTATTTATTAGCAGTGTTGCTTCATGTATGAACCTATGGGCCTTAATCATGGATGCAGGGACAGGTTTTACTTCCCAAGTTTATGAACTCTCCCCTCATTTTCTCCATAAGGAATGGATCATGGAGCAGTGGGAAAAAAATTACTACATCAGCGCAATTGCTGGAGCTGTAAAGGAATGGATCATGGAGCAGTGGGAAAAAAATTACTACATCAGCGCAATTGCTGGAGCTGTAAATGGGAGCTCATTAGTAGTAATGTCTAAGGGCACACAATATTTGCAGCAATCGTACAAAGTTAGTGACTCGTTTCCTTTCAAGTGGATTAACAAAAAGTGGAGGGAGGGCTTTTTTGTGACTGCAATGGCCACCTCGGGGCCCAGATGGGGAGTAGTTATGTCCCGTGGTGCAGGATTTTCTGACCAGGTGGTTGAACTAGATTTTCTGTATCCTAGTGAAGGGGTTCATAAGCGGTGGGATTGTGGATACCGAATCACAGCGGCTGCTGCAAATTGGGACCAAGCTGCTCTTGTCCTGAGTGTGCCAAGGAGGAAGCCCCTGGATGAAACTCAGGAAACACTTAGGACTACTGCTTTTCCTAGTACACATGTCAAGGAGAAATGGGCGAAGAACCTCTACATTGCTTCTGTTTGCTACGGACGTACAGTTTCTTGA 2049 0.4534 MPLRRSGVRRGRAAAKKEEQSPPAAAVNENLVAPPKKEEKNRGLEEAGGAEKEEVGEKQMDDIDSGGRSNDKANAGEDDGNACSLPEKVQVGNSPWYKVERKLGKGGFGQVYVGRRVSGANLSERTGPGAVEVAMKFEHKSSKGCNYGPPHEWQVYNTLGGSHGVPQVHYKGKQGDYFIMIMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGAPGTPDEKKLFLVDLGLATKWRDSTTGLHVEYDQRPDVFRGTVRYASVHAHLGRTSSRRDDLESLAYTLIFLLRGRLPWQGFQGDNKGFLVCKKKMGTSPDVLCSFCPQPFKLFVEHVVNLKFDEEPNYPKYISLFDGIVGPNPDIRPINTEGAQKLIGHKRGRLAMEEEDDEQPKKKFRMGLPASQWISVYNARKPMKQRYHYNVSETRLSQHIEKGNEDGLFISSVASCMNLWALIMDAGTGFTSQVYELSPHFLHKEWIMEQWEKNYYISAIAGAVKEWIMEQWEKNYYISAIAGAVNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFFVTAMATSGPRWGVVMSRGAGFSDQVVELDFLYPSEGVHKRWDCGYRITAAAANWDQAALVLSVPRRKPLDETQETLRTTAFPSTHVKEKWAKNLYIASVCYGRTVS 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi517g00015 682 SUPERFAMILY Protein kinase-like (PK-like) 97 377 IPR011009 -
Sebi517g00015 682 ProSiteProfiles Protein kinase domain profile. 97 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi517g00015 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Sebi517g00015 682 FunFam casein kinase 1-like protein HD16 70 417 - -
Sebi517g00015 682 Pfam Protein kinase domain 97 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi517g00015 682 MobiDBLite consensus disorder prediction 1 88 - -
Sebi517g00015 682 CDD STKc_CK1 97 373 - -
Sebi517g00015 682 MobiDBLite consensus disorder prediction 33 75 - -
Sebi517g00015 682 ProSitePatterns Protein kinases ATP-binding region signature. 103 136 IPR017441 GO:0005524
Sebi517g00015 682 PANTHER CASEIN KINASE-RELATED 91 636 - -
Sebi517g00015 682 Gene3D Transferase(Phosphotransferase) domain 1 64 417 - -
Sebi517g00015 682 SMART serkin_6 97 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi517g00015 Sebi-Chr517 237162 242629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi517g00015 58 321 AGC Kinase Gene Family AT3G08730 23.308 2.11e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Sebi517g00015 Pkinase 3.4e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi517g00015 - - gmx:100800869 1160.98