Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi517g00005 ATGGCACCTATGAACTGTACGGACACGAGCCGGGTTTGCACTTCTTTCTTGGCTTTTAAGCCTCAACCGAACCAGACATTGGCGGTGATACAGAGCATGTTTGATGTGTTGCCTGGTGACATCACCGTTGAAGGCAATGACTGGAATTACATATTCATCAGGAAGAACTGTTCTTGTGCTGCTGGTATCAAGAAATATGTGTCTAACACCACCTTCACTGTGAAATCCAATAATGGGTTGGTGTATGATTTGGTGATGGATGCTTATGATGGACTTGCTTTCCTTCCCAACACCACTCGGAGGGCAAAGAATGGTGCTGTTATATCACTGAGGTTGTTCTGTGGCTGCTCTAGTGGACTGTGGAACTATCTGATGAGTTATGTTATAAGAGATGGGGATAGTGTTGAATCGTTGGCAAGCCGATTTGGGGTTAGTATGGATAGTATTGAGAGTGTAAATGGCATCGATGATCCTGATAATGTCACTGTGGGTTCACTTTATTATATTCCTCTGGATTCGGATATGTTTGAGTTTGAGAGGGATGCTTTAGTTCTATATTGCTTTATGCAGTGGCTTATTGTTCAGTTTAGGACAACTGGGTGGAATGTGAGAATTGGGGCTATTTTTATTCCTGGTGATCCTTATCCCCTGAACAATGCTTCTCCACCAGCTCCTGTTCCTGCCCCATCTGTTGATAATTTTTCAGCTCTGGGGCCTGAAGTATTTGATATGGATAAGCCTGTGGTTTTTACATATGAAGAGATTTTTTCCTCGACTGATGGTTTCTCTGATTCAAATCTACTTGGGCATGGAACATATGGGTCTGTTTACTATAGCCTTCTGCGTGACCAGGAAGTTGCAATTAAAAGAATGACAGCTACAAAAACAAAAGAATTTATGTCAGAGATGAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGCTATGCAGCTAGTCATGATGAGCTTTTCCTAGTTTATGAATATGCTCAGAAGGGTTCGCTCAGAAGCCATTTGTATGATCCTCAAAATAAGGGCCATTCCTCACTTTCTTGGATCATGAGGGTCCAGATTGCACTTGATGCTGCTAGGGGCCTTGAATATATACATGAACACACAAAAACTCACTATGTCCATCGTGATATCAAGACAAGCAACATTTTACTTGATGCTTCCTTTAGAGCAAAGATTTCAGATTTTGGATTAGCAAAACTTGTTGGGAAAACAAATGAGGGAGAAATTTCAACTACCAAAGTAGTTGGTACATATGGATATTTAGCTCCAGAGAAAATTGAAGATTGTTCAGCTCAAAGCATAACTGAAATGGCCATGCTGGCAAAGCAATGTGTGGATGATGATCCCATCTTACGACCTGATATGAAACAAGTTGTGATATCCCTCTCACAGATTCTCCTGTCTTCTGTTGAGTGGGAAGCAACTCTAGCTGGGAATAGCCAGGCAAAAACGGCGTGGTTGAGTTGCGTTTATGAACCCGCCCTGTCGAAAATTTCAAATAACAGAGAGATGAAAGGTTTGGGGAATGCATCGAACAAGATGATGAAGTTGGATTGTGAGAAGCAAAAGAATGATGACGCCCTCAATCGCCTTCACTCCGATCTTTCTTCTCTTTTCCACCAGATTGACGAGCTTGTTGTGAAAGCGTTTAAGGTGAAGAGCGTGAGCAAAGAGGGCACAAAAAAAATTGAATCTTTCTCCAATGTCTTGTCTGACATGCTGTCATGTTTAAAGCCATGGGTGCCCAGGTTGCAAATTGCACTCTCATCACCACCCTCAGTTGAGCCTGAGCCTGAGCCTGAAAGTAAAAGTGAACAAGTTCCTTGTGATGAAAGCAATGTCTGTGACAGTCCTCAAGAGACCACCTTGGACTCTTTAGTGTCCCCTTCTCCCCTTGTGTCATGGAGGGCTAACTGTACTGTTGAGAGAGGTAGACAAATGTTTATGCTCACTCCTCTTCCATTGTCAAAGGCATTATCCTCAAAAGCCCAGCAACAACCAGCACCTAAATCAGAGTTCAGTGAATTTGCTTCCTCCAATAATGCTATTGGGACATCAACCTTTTTAGCCTTATCTAAAGACGTGGCTGCTTTTCTGGATAATGTTTCAGTGAAGCAAACACCAATGAAGCCTGCCCCTTCTCTTGCCAATGAAGAGGCAAACAATCAAGAGCCTGGGTCAATTTCTTCGCCACTTTGTCCTAAGAGAGACACCTCCATGCTTGTTATGATGACTCCTTGCTTAAAATTCTCACCTCTAAAGTCTTGTGTTTTGCTTGAACCCATATCTGAAATCTGTCATCATGGTAATGAGAAGGTTCGCAAGTGCACTCCGTTTCCTGTTGGGGTTCATTACAGTGATTCAGAAGCTTCTGAATCTCCTGGTAGCGATGCCTCACAGGGTTTGGCATTGAAGTATCCAGAACTCTTGGGGATACAACAGGTTTCTAAGTCACAAGTTGGAAAGAAAAATGTGGAAGCATCACCGGATTGGCTTACCTCACCTCCTAAAACTTGTGTGTTGCTGGAGCCACCTGATGAGAACTCAGTGGAGTTGGAGGAGGCTGATAATGAATCATGTATACAGATAACTGATTCCATTCTCAAGCAACAAGCCAGCAAATTGAAAGATGATGTTCCCAAAGATCATAATCAAGCCCAAAAATCTTGTAAACAAGATCATTTTGTTGGCAACTTATCACGTATAGAGAGCACTCCCATGTGGTTGGAGCCTGAAAGCTCGTTTCGAACAGGGAAACGTCCTGGTGAAAATACGTTGAAGAAGGAATTGTGGACCAAGTTTGAAGCAGCATCCACTTGTGGGTTTCAACCCAAGTTACCCACAGTTCAAGAGAATACTCAGAAAGGGTTTCTTGACCTATTGGAAGAAGCTTCCTATGATGAATAA 2934 0.4257 MAPMNCTDTSRVCTSFLAFKPQPNQTLAVIQSMFDVLPGDITVEGNDWNYIFIRKNCSCAAGIKKYVSNTTFTVKSNNGLVYDLVMDAYDGLAFLPNTTRRAKNGAVISLRLFCGCSSGLWNYLMSYVIRDGDSVESLASRFGVSMDSIESVNGIDDPDNVTVGSLYYIPLDSDMFEFERDALVLYCFMQWLIVQFRTTGWNVRIGAIFIPGDPYPLNNASPPAPVPAPSVDNFSALGPEVFDMDKPVVFTYEEIFSSTDGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFMSEMKVLCKVHHANLVELIGYAASHDELFLVYEYAQKGSLRSHLYDPQNKGHSSLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKTNEGEISTTKVVGTYGYLAPEKIEDCSAQSITEMAMLAKQCVDDDPILRPDMKQVVISLSQILLSSVEWEATLAGNSQAKTAWLSCVYEPALSKISNNREMKGLGNASNKMMKLDCEKQKNDDALNRLHSDLSSLFHQIDELVVKAFKVKSVSKEGTKKIESFSNVLSDMLSCLKPWVPRLQIALSSPPSVEPEPEPESKSEQVPCDESNVCDSPQETTLDSLVSPSPLVSWRANCTVERGRQMFMLTPLPLSKALSSKAQQQPAPKSEFSEFASSNNAIGTSTFLALSKDVAAFLDNVSVKQTPMKPAPSLANEEANNQEPGSISSPLCPKRDTSMLVMMTPCLKFSPLKSCVLLEPISEICHHGNEKVRKCTPFPVGVHYSDSEASESPGSDASQGLALKYPELLGIQQVSKSQVGKKNVEASPDWLTSPPKTCVLLEPPDENSVELEEADNESCIQITDSILKQQASKLKDDVPKDHNQAQKSCKQDHFVGNLSRIESTPMWLEPESSFRTGKRPGENTLKKELWTKFEAASTCGFQPKLPTVQENTQKGFLDLLEEASYDE 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi517g00005 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 381 393 IPR008271 GO:0004672|GO:0006468
Sebi517g00005 977 MobiDBLite consensus disorder prediction 717 740 - -
Sebi517g00005 977 FunFam Kinase family protein 236 333 - -
Sebi517g00005 977 ProSiteProfiles LysM domain profile. 125 169 IPR018392 -
Sebi517g00005 977 Gene3D LysM domain 122 176 IPR036779 -
Sebi517g00005 977 SUPERFAMILY LysM domain 125 170 IPR036779 -
Sebi517g00005 977 MobiDBLite consensus disorder prediction 598 624 - -
Sebi517g00005 977 SUPERFAMILY Protein kinase-like (PK-like) 241 471 IPR011009 -
Sebi517g00005 977 ProSiteProfiles Protein kinase domain profile. 262 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi517g00005 977 Gene3D Phosphorylase Kinase; domain 1 238 333 - -
Sebi517g00005 977 SMART LysM_2 126 170 IPR018392 -
Sebi517g00005 977 PANTHER OS05G0532500 PROTEIN 504 976 - -
Sebi517g00005 977 Gene3D Transferase(Phosphotransferase) domain 1 335 442 - -
Sebi517g00005 977 SMART serkin_6 262 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi517g00005 977 FunFam Os07g0541700 protein 335 426 - -
Sebi517g00005 977 Pfam LysM domain 127 164 IPR018392 -
Sebi517g00005 977 MobiDBLite consensus disorder prediction 725 740 - -
Sebi517g00005 977 ProSitePatterns Protein kinases ATP-binding region signature. 268 289 IPR017441 GO:0005524
Sebi517g00005 977 Pfam Protein kinase domain 263 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi517g00005 Sebi-Chr517 111102 121185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi517g00005 436 491 Receptor kinase-like Gene Family AT1G51940 76.786 1.48e-18 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Sebi517g00005 Pkinase 5.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi517g00005 - - gmx:100789067 597.43