Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi516g00039 ATGACTTGTTTAGAAGGAAACACTTCAAGGTCGAGAAGCAGGGGAAAGAGTGAGATGAAGAAAGTGAACAAGCGTTTGTTACGTGACATTTTCAACAAAGTGACTGAGCTATCAATTCTATGCGAAGCAGAGACAGCTTTGATCATTACTTCTCCAAATGACAAACTCTATGCTTGCGGCTACCCTTCCCCTGACACTGTCATTCAGGGGTTCCTCACCACAAGAGGAAACCGTTGA 237 0.4388 MTCLEGNTSRSRSRGKSEMKKVNKRLLRDIFNKVTELSILCEAETALIITSPNDKLYACGYPSPDTVIQGFLTTRGNR 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi516g00039 78 SUPERFAMILY SRF-like 13 75 IPR036879 GO:0003677|GO:0046983
Sebi516g00039 78 ProSiteProfiles MADS-box domain profile. 30 63 IPR002100 GO:0003677|GO:0046983
Sebi516g00039 78 Gene3D - 19 78 IPR036879 GO:0003677|GO:0046983
Sebi516g00039 78 MobiDBLite consensus disorder prediction 1 20 - -
Sebi516g00039 78 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 58 IPR002100 GO:0003677|GO:0046983
Sebi516g00039 78 SMART madsneu2 12 62 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi516g00039 Sebi-Chr516 741076 741312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi516g00039 10 72 Type I MADS-box Gene Family AT5G60440 36.111 6.69e-08 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi516g00039 SRF-TF 9.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi516g00039 - - gsj:114418701 79.3369