Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi516g00030 ATGGTTGATTCTGACCGCATTAACGATGACCTATCAAAGATTTCATCTCTCGCAAGTGAAGAAGATGCACCTAATGATGAAGGAAATGATGTCAAGTTGACTTCTAGGGACCAAAGAGAGGCTCTACCAGATGAGCCCAAGTGTGTTATATGTGGCCGCTACGGTGAGTATATATGTGATGAAACTGATGATGATGTTTGCAGTTTGGAATGCAAACAATCACTACTATGCAGAATTGCCAAATCGTCTTCTCAGGTTGGAGGTCTTCCACAACCTAAAAAGCTACCTGCAGCTGATGAGTGCTTTTATGTTAGAGATACTGATAACGGATCAGGAACTCCATCTTTTGATAGTGATCAGGCTGAATTGATTAGAAAGAAACTTGGCATTCATGTGAAGGGTGATGTAGTGGCACCGGTCTTGTCATTCACTTCCTGTAACCTCCCTGACAAACTTCTCCATAATATAGAAGCAGCAGGATATGACATGCCTACACCTGTCCAAATGCAAGCAATACCTGCAGCTTTGATGAGGAAAAACATGCTTGTTTTGGCTGATACAGGATCTGGAAAGTCTGCTTCATTTCTTATTCCATTAGTTTCTCGTTGCGCAAGTCATCGTCTGACATTTGTTTCTGATAAAAGGAACCCTTTGGCTTTGGTGTTAACACCTACCAGAGAGCTCTGTATACAGGTTGAAGAGCATGCTAAATTGCTTGGAAAGGGGTTGCCTTTTAAAACAGCACTTGTGGTTGGTGGTGATGCTGTGGCTGGACAACTCTACCGTATTCAACAAGGAGTGGAATTAATTGTGGGAACCCCAGGAAGGCTTGTTGATCTTTTAATGAATCATGAGATTGACTTAGATGATGTAATGACTTTCGTGGTGGATGAGGTGGACTGCATGCTGCAAAGTGGTTTTCGAGATCAGGTCTTGCAGATATATAGGGCTCTGTCACAACCTCAGGTCTTGATGTATTCTGCAACAATGTCTAATGATATAGAGAAGATGGCAAACTCTCTGGCAAAAGGTACTGTGATTATCTCTGTTGGGGAACCTAATAGACCAAATAAGGCTGTGAAGCAGCTAGCTATTTGGATTGAGTCAAAACAAAAGAAGCAGAAGCTGTTTGACATTTTGGCAAGTGAGAAACATTTTAAGCCACCTGTTGTAATATATGTGGGCTCCAGAATTGGTGCAGATCTCCTGGCGAATGCAATTACAGTTTCCACAGGAATTAAAGCAGTTTCAATTCATGGGGAGAAGTCTATGAAGGAAAGGAGAGAAATAATGCAGTCGTTTATGGTGGGTGAGGTCCCAGTGATTGTGGCTACTGGAGTTTTGGGTAGGGGAGTTGATCTATTGGGCGTGAGACAGGTAATCGTGTTTGACATGCCTAATTCTATTAAGGAGTATGTACATCAGATTGGAAGGGCATCTAGAATGGGAGAAGAAGGTCAAGCTATAGTTTTTGTGAATAAGGAGAATAAGAATGTTTTCCGGGAATTAGTTGATGTGCTAAAATCTGCTGGAGCAGCTGTGCCTCGGGAGCTTGTCAATTCACAGTATACCACCGGATTTATCTCTGGCAGCAAGGGTTCAAAAAAGAGAAAGCAAAGATGGTGA 1626 0.4225 MVDSDRINDDLSKISSLASEEDAPNDEGNDVKLTSRDQREALPDEPKCVICGRYGEYICDETDDDVCSLECKQSLLCRIAKSSSQVGGLPQPKKLPAADECFYVRDTDNGSGTPSFDSDQAELIRKKLGIHVKGDVVAPVLSFTSCNLPDKLLHNIEAAGYDMPTPVQMQAIPAALMRKNMLVLADTGSGKSASFLIPLVSRCASHRLTFVSDKRNPLALVLTPTRELCIQVEEHAKLLGKGLPFKTALVVGGDAVAGQLYRIQQGVELIVGTPGRLVDLLMNHEIDLDDVMTFVVDEVDCMLQSGFRDQVLQIYRALSQPQVLMYSATMSNDIEKMANSLAKGTVIISVGEPNRPNKAVKQLAIWIESKQKKQKLFDILASEKHFKPPVVIYVGSRIGADLLANAITVSTGIKAVSIHGEKSMKERREIMQSFMVGEVPVIVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIVFVNKENKNVFRELVDVLKSAGAAVPRELVNSQYTTGFISGSKGSKKRKQRW 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi516g00030 541 Pfam Helicase conserved C-terminal domain 372 483 IPR001650 -
Sebi516g00030 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 497 IPR027417 -
Sebi516g00030 541 CDD SF2_C_DEAD 360 492 - -
Sebi516g00030 541 Pfam DEAD/DEAH box helicase 165 336 IPR011545 GO:0003676|GO:0005524
Sebi516g00030 541 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Sebi516g00030 541 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 522 IPR001650 -
Sebi516g00030 541 Gene3D - 112 350 IPR027417 -
Sebi516g00030 541 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 348 IPR014001 -
Sebi516g00030 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 350 IPR027417 -
Sebi516g00030 541 Gene3D - 28 85 - -
Sebi516g00030 541 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 137 523 - -
Sebi516g00030 541 SMART ultradead3 160 363 IPR014001 -
Sebi516g00030 541 MobiDBLite consensus disorder prediction 1 38 - -
Sebi516g00030 541 Gene3D - 351 524 IPR027417 -
Sebi516g00030 541 Pfam HIT zinc finger 46 72 IPR007529 -
Sebi516g00030 541 FunFam DEAD-box ATP-dependent RNA helicase 41 28 85 - -
Sebi516g00030 541 SMART helicmild6 401 483 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi516g00030 Sebi-Chr516 576287 578332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi516g00030 135 503 Eukaryotic Initiation Factors Gene Family AT3G19760 29.412 1.16e-51 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi516g00030 K19466 - gmx:100781473 850.892