Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi516g00020 ATGAATCCCTCCACGTCATCACCATCATCCTCCTCCAAGGCCAAAAAGAAGCAAACCACCGCAACACAAGAGCAGCATCATCAACAACATGAAACTGCATGGGGAGGGAGGTACCTTGGCGTGAGAAGAAGGCCATGGGGAAGATATGCAGCGGAAATTCGTGACCCCTCAACTAAGGAGAGACATTGGTTGGGCACATTTGACACCGCAGAAGAGGCCGCCCTGGCATACGACGGGGCGGCCCGCTCTATGCGCGGGTCACGTGCCCGGACCAACTTCGTCTATGCGGACACCCCGTCGGGCTCCTCCGTCACCACCATCCTCTCCCCGGATGAACAAACCCAACTCCATCACTCTCAAGAGCTCTCCTTCTTCAACCCGAATCCGTTTACCCAACAACCCGACCCGACTCCTCCTCACTTCACGGTTTACCCGGGAATGACCCATACTGCCACCGCCTGGGCGGCGGCGGTGGAAGTAGCCTCATCCGGGAGAGGTGGCATGGAGGGTTCACATTTTCATCAGGTGTTCGATGATGGTGAAACGCAGCTTCCACCGTTGCCACCGGATATCACAAGTTCCATGGGCTATGATATGGGTCATGGGTTTTACGGAGACAGCGTCGGGTTTTCGGATCCGGCTTCTGAAATCGGGTCGAATGGGTCGGGTTACCCGTGTGTGGGGGTTGACTCTGGTGAGGACGTGCATAACCCACTTTTCAGTACAATGCCGACGGTTTCGGATAATGTGGCGACAGGAGCTGACGGTTTTGATTTGGGGAGCTCTTCTTATTTCTTTTGA 801 0.5531 MNPSTSSPSSSSKAKKKQTTATQEQHHQQHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDGAARSMRGSRARTNFVYADTPSGSSVTTILSPDEQTQLHHSQELSFFNPNPFTQQPDPTPPHFTVYPGMTHTATAWAAAVEVASSGRGGMEGSHFHQVFDDGETQLPPLPPDITSSMGYDMGHGFYGDSVGFSDPASEIGSNGSGYPCVGVDSGEDVHNPLFSTMPTVSDNVATGADGFDLGSSSYFF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi516g00020 266 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Sebi516g00020 266 MobiDBLite consensus disorder prediction 1 37 - -
Sebi516g00020 266 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Sebi516g00020 266 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Sebi516g00020 266 CDD AP2 37 93 IPR001471 GO:0003700|GO:0006355
Sebi516g00020 266 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 146 - -
Sebi516g00020 266 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Sebi516g00020 266 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Sebi516g00020 266 MobiDBLite consensus disorder prediction 1 18 - -
Sebi516g00020 266 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Sebi516g00020 266 Pfam AP2 domain 38 86 IPR001471 GO:0003700|GO:0006355
Sebi516g00020 266 FunFam Ethylene-responsive transcription factor 2 37 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi516g00020 Sebi-Chr516 411829 412629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi516g00020 9 257 AP2-EREBP Transcription Factor Family AT5G13910 42.636 1.17e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi516g00020 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi516g00020 K09286 - gmx:100809600 321.627