Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi512g00009 ATGGCTGCTGTTCATGGTCCATTTGATTCAATTAAAGATATAAAAGAGGGTAGGCAGGCTTTGAGGCTTAAAGTTAGGGTTGTTAGGGTCTGGGAGGTATGCCAAAGAGACAATCCTTCCAATGTATTCTCTCTTGAGATGGTTTTGTTGGATGCTGATGGTGATAGGATTCAAGCAAGCATAAGGAAAGCCATGATTAGGAAATTTAGGAACTCTATTGTTGAGGGTGTTGTCTATAGGATGATTTACTTCTCAATCCTTGAAAACAATTTCATACCAAAATTTGGAATCCAAGCTAAGACCTCTGAGGAGCTTCGGGAAACTAATGGAAAGTCAGATTATATGTTTGATTTCATTGGTCTTTTAACTGCTGTGGGTGAGGAGAAGGAGTTCACAAAATTTGGGAGGCCAATTAGAGTACTTGAAATAGAGTTGAAAGATGACAAGGGTGTGATGAGGTGTTCATTATTTGGACACTTCATTGAAATCATGAAAGATTTTATTGCTAATGGTGTGGAAGACCTTGGCATATTAGTCATCCAGTTTGCAAAAGTGAAGGAATACATGGGTCAGGTTTCCCTTAACACTGTTGGTAACTCCACAAGGTTGCTTTGGAATGCTCAGATTCCAGAGGTTACCTCCTTTAAGAACAGTATTATGCATAATGATCTGGAAATGCATGCTCCCCTCAAGATGATTGGGTATAACAATTATTCACCAACTGAAGAGTTTCTGGTCCATTTTCCTCGAAAGTGCATAGAGGATCTCCATATGACTGAAGAGGAGGGAAACTTTATCTGTCTTGGGAAAGTTGAGGGAATTGTGAAACTTGACTACTGGTGGTATATGGCATGTAAATGCCATAAGTCAGTCAACCTGAATGATTCTGGGAGTTATTACTGTACTGGATGTGTGGGATTTGTTGAAGATGTTACTCCTAGGCTGAAGTTGGAGGTTAAAGACCACAGTGACAGTGCTCATTTTGTCCTATTTGATTTTGATGTTGCATGTTTGTTATCAAAGACATGTGCCTCGATTGTTGGGGATGCCAAGGTTCCTACCCTTGATTATCCCCTGGACTTGGACATGGTCATTGGCAAGGAGCTTCTCTTCAAAGTTGAAGTGAAAGCTGACCGTGCCTATAAGTTTGATGATTCATTTAAGGTTAGGAGGACATGTGATGATGAGGATATTATTAGGGAGTTCAAAAATGAAGGATCAATCATGACTCCTAAGAAGTCCAAAATGAAATCACCTATAAATGAGCTGTGTAATGAGGATGATGTCCAGTCTGGAGATGGACCAAAAGAATCTCAATCAGTCCCTGTCATTGAACTATTTAATGAGGCTGAAATGAGTCCCCTCACTGTTGAAGAGTGTTCCAGTGCTGCTGCATGTTTGGCACCTCTGAAACGTAAGACTGGGCGTGGTGCTGTGCCAAGGAAAGGACTGCATGGGAAGGTGCTGAAGATTGAGAAGGATTAG 1485 0.4088 MAAVHGPFDSIKDIKEGRQALRLKVRVVRVWEVCQRDNPSNVFSLEMVLLDADGDRIQASIRKAMIRKFRNSIVEGVVYRMIYFSILENNFIPKFGIQAKTSEELRETNGKSDYMFDFIGLLTAVGEEKEFTKFGRPIRVLEIELKDDKGVMRCSLFGHFIEIMKDFIANGVEDLGILVIQFAKVKEYMGQVSLNTVGNSTRLLWNAQIPEVTSFKNSIMHNDLEMHAPLKMIGYNNYSPTEEFLVHFPRKCIEDLHMTEEEGNFICLGKVEGIVKLDYWWYMACKCHKSVNLNDSGSYYCTGCVGFVEDVTPRLKLEVKDHSDSAHFVLFDFDVACLLSKTCASIVGDAKVPTLDYPLDLDMVIGKELLFKVEVKADRAYKFDDSFKVRRTCDDEDIIREFKNEGSIMTPKKSKMKSPINELCNEDDVQSGDGPKESQSVPVIELFNEAEMSPLTVEECSSAAACLAPLKRKTGRGAVPRKGLHGKVLKIEKD 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi512g00009 494 SUPERFAMILY Nucleic acid-binding proteins 7 90 IPR012340 -
Sebi512g00009 494 CDD RPA1_DBD_A_like 22 95 - -
Sebi512g00009 494 Gene3D - 104 223 IPR012340 -
Sebi512g00009 494 SUPERFAMILY Nucleic acid-binding proteins 108 220 IPR012340 -
Sebi512g00009 494 Gene3D - 245 403 IPR012340 -
Sebi512g00009 494 Gene3D - 7 103 IPR012340 -
Sebi512g00009 494 CDD RPA1_DBD_C 254 403 IPR047192 -
Sebi512g00009 494 PANTHER OS03G0429900 PROTEIN 183 392 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi512g00009 494 CDD RPA1_DBD_B_like 117 216 - -
Sebi512g00009 494 Pfam Replication factor-A C terminal domain 274 393 IPR013955 -
Sebi512g00009 494 SUPERFAMILY Nucleic acid-binding proteins 249 393 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi512g00009 Sebi-Chr512 183046 185444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi512g00009 23 324 Core DNA Replication Machinery Family AT4G19130 22.350 7.05e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi512g00009 - - lja:Lj6g3v0884310.1 340.887