Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi511g00030 ATGTTGTTATCTGAAATGGATCATATGGAAGGCATAGTGATGGAAGAACATGCTGTTCACGATGCCAACTGCATCATCAAAGGGAAGCGCACTAAGCGACGGTTGAGGCCTTTGTCTCCTTGCGCCGTAACCGCCGCGGCAACCGCCATGGCTTCCAGCTGCTCCAGCGCGTCCGGAAATGGCGGAGGAGGTGACTGCGGGTCGTTTTCAACTAACAGCTTTGAAGGCGCTGATCAGGAAGAGGAAGACATGGCTAAGTGCTTGATTCTCTTAGCACAAGGGAAAGGAGGAAGAGATTCTCACAACCACCAACAACAACACAAACAGCAAGATGAAACTGAAACTGAAAATGAAAATCATGTGGATGGCAATAAGATTGTGCCAGAGAGGGCTAACAAAATTGGTTTATATATTTATGAGTGCAAAACCTGTAACAGAACATTTCCTTCTTTTCAAGCGTTAGGTGGACACAGAGCCAGTCACAAGAAGCCTAAGATGATGGTGATTACTTCTCAAGAGGAAAAAAAATCACCACCATCGCTACCACAAGCATCGCCACTAATCATGAAAAGTGAATTTGAAGAAGCAAAGCAAAGCCATATCAAGGTTATTAATCCTCCTGTTTCGCTTGAATTAGGGTGTGGTATTAATGGAGGTGGTTTGAGTTTGATCCATGGTGGTAACAAATCCAAGTCCAAGATTCACGAGTGTTCCATTTGCGGTTCAGAATTCACATCTGGCCAAGCGTTGGGTGGTCACATGAGGAGGCATAGAGCATCTACAATTAACATTAACAACACTGCTGATGTGAAGCCTCGGAATGTTCTAGAATTGGATCTCAATCTTCCGGCGCCGGAGGATGATCTCCGGGAGTCCAAGTTTCAGTTTCCGGCGAACCAGAAGTCTTTGTTGCTGTCTCCGGCTTTGGTGATGGGTTGCCATTATTAG 948 0.4568 MLLSEMDHMEGIVMEEHAVHDANCIIKGKRTKRRLRPLSPCAVTAAATAMASSCSSASGNGGGGDCGSFSTNSFEGADQEEEDMAKCLILLAQGKGGRDSHNHQQQHKQQDETETENENHVDGNKIVPERANKIGLYIYECKTCNRTFPSFQALGGHRASHKKPKMMVITSQEEKKSPPSLPQASPLIMKSEFEEAKQSHIKVINPPVSLELGCGINGGGLSLIHGGNKSKSKIHECSICGSEFTSGQALGGHMRRHRASTININNTADVKPRNVLELDLNLPAPEDDLRESKFQFPANQKSLLLSPALVMGCHY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi511g00030 315 MobiDBLite consensus disorder prediction 100 124 - -
Sebi511g00030 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 235 262 IPR013087 -
Sebi511g00030 315 Pfam C2H2-type zinc finger 139 164 - -
Sebi511g00030 315 Pfam C2H2-type zinc finger 235 259 - -
Sebi511g00030 315 SMART c2h2final6 235 257 IPR013087 -
Sebi511g00030 315 SMART c2h2final6 139 161 IPR013087 -
Sebi511g00030 315 PANTHER ZINC FINGER PROTEIN ZAT5 73 299 - -
Sebi511g00030 315 SUPERFAMILY beta-beta-alpha zinc fingers 138 257 IPR036236 -
Sebi511g00030 315 MobiDBLite consensus disorder prediction 95 124 - -
Sebi511g00030 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 166 IPR013087 -
Sebi511g00030 315 ProSitePatterns Zinc finger C2H2 type domain signature. 237 257 IPR013087 -
Sebi511g00030 315 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Sebi511g00030 315 Gene3D Classic Zinc Finger 220 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi511g00030 Sebi-Chr511 710935 711882 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi511g00030 21 315 C2H2 Transcription Factor Family AT2G28200 42.262 7.97e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi511g00030 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi511g00030 - - gmx:100788646 288.5