Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi511g00026 ATGGCCAAAGGCACGGATTCGGATGAGTTTGTGATGCTTTCTAGGGTCCGTACGGGTCTCAAGAGGGAGTTTGCATTCGCCATGAAGGCCCAATCAGAGATCGGTGGTGGTTCTTTAGGTCGAACCCGCGCTAGCAAGAACCGGAATGAGGTTCCGGTTCAGACCGCTCCGGCCAGAAAGAGGTCAAGGAAGTCCGCTTCTGTGGAGGAGGATGCGGTGGTGAAAAACGCGGAGGATGTGGCCGTGGTGAAAGGCGCAGAGGATGTGGTGGGCGATGCCATGAGCGAGGAGGATGCTAAGAGTGATGTGGTGGATCTTGCGAGCGATGATGAACCCAAGAACAACCAAGAGGGAGAATCTGTTGCTGCAGTGCCCATTTGTGAAGAGGAACCAAAGAGTGATGTGGTGGTGGAAACTGTTATAAACGAAGAAGAACCTCGTGTAGTGATTGAGTCTTTGAAGAAAGAAGAGGTTAATAATGATGAGATAGCGCAAAAGAAGGAAGATGAGGTTAATAATGATGAAATAGCACAACCCCTTTGTGAAACTGGGGTCAAAGAGGATTTGCAGGAAACTGTGGTCAAAGAAGAGGATTTGCAGCAAACTGGCGTCAAAGAGGAGGATTTGCAGCAAACTGGCGTCAAAGAGGAGGTTTTGCAGGATATGGAGAAGGGTGCTGCTCCAGATGAAAAGAGCTTGGAGAAGGGTTCTGCATCAGAGGAAAATTGTGGCACTAAAGGGGCAGTCCCGGTTTTGGTTAGTGATAAAAAGCCGAAGAAAAAAATGCCCTTAGAGAAGCCAATGAGGCGGTTTACCAGGTCAGCATTGAAGGAAAAATCTGATGAAACAAAAGTAATAAATGATGGGGAACATACTAGTGCTGATATTGATGATAATGTTAAAATGGAAACTGAGGCTTCCCCATTAACAACCACTCCAACTCCATCGAAAACGCCCAAGAGTAGCTCGAAGAAGTTCCCTACCAAGCTAAAGGATCTTCTAGCTACAGGGATTATTGAGGGACTGCCAGTGAAGTATGTTAGGGGAACGAAGGCACGGAAACCTGGAGATGCTGGGCTTCAAGGAGAGATTAGAGGCTCTGGGATTTTGTGCTATTGTGGGAGTTGTAAAGGGGTTGAGGTTGTCACGCCCACTGTGTTTGAGCTGCATGCTGGTAGTGCTAACAAACGTCCCCCAGAGTATACTTACCTTGAGAATGGAAATACCCTCCGAGATGTCATGAATGCCTGTTGGAGTTTTCCATTGGAAACCTTGGAGGAAGCCGTCCAAAAGGTCCTCGGTCACTTCACTATGAAGAAATCTACCATATGTTTGAACTGCAGAGCATCTATGTCTGACGATGGAAAGGGTGTGTCAAGACTAGTATGTGATTCATGCATGGAGTTAAAAGACTCTCAACCTAGCCCCCCTCAAACAGCCATGGCAAGCAGTTGTGCCCCTCAAACAGCCATGGCAAGCAGTTGTGCCATTCAATCAGCCATGGCAAGCAGCTGTGCCCCCCAAACAGCCATGGCAAGCAGTTGTGCCCCTCAAACAGCCAAGGCAAGCAGCTGTGCCCCTCAAACAACAATGGCAAACTGTTACTCCCCTCAAACAGCTGTGGCAAGCAGTAAAAGTGTTTCATCAGCATTTCAACCCAGATCACCAGAACCAGTTATGGTTCCAAAGTCATTAAACAATGGGATTAAGCACAGCGAGTCTCGTGGTAAGAGTCAGGGAAGATTAACTAGAAAGGATCTACGCTTGCATAAGTTGGTATTTGAAGAAGACGTGTTGCCTGATGGAACTGAAGTAGCCTACTATGCTCATGGAAAGAAATTGTTGGTTGGATACAAAAAGGGATATGGAATTTTTTGTACCTGCTGCAACTCTGAGGTCAGTGCCTCTCAGTTTGAAGCTCATGCTGGCTGGGCATCCCGACGCAAGCCTTACTTGCACATATACACATCCAATGGAGTCTCCCTCCATGAGTTGTCTATCTCTTTATCGAAAGATCGGAGGTTTTCTACCACTGATAATGATGACCTTTGCAGCATATGTGAGGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCCAGAGCTTTTCACATAGATTGTGTTCCTCTACCATGCATTCCAAGTGGGACTTGGTATTGTAAATATTGCCAGAATCTTTTCCAGAAAGACAGACATGGGCAACATTATGTGAATGCTCTGGCAGCTGGAAGAATTGAAGGCACTGATCCTTTTGAACAGATAAACCGAAGATGTATTCGTGTTGTCAAAACTGTTGAAATTGACCATGGTGGATGTGCCTTGTGCAGATGTCATGATTTCAGTAAAATCTTTGGTCCCCGAACAGTAATTATTTGTGATCAGTGTGAGAAAGAATATCATGTTGGGTGTTTGAAGGAGCATAACATGCAGAATCTAGAGAAATTGCCTGAAGGGAATTGGTTCTGCAACACGAGTTGCAGTCAAATTCATGCTGCTCTGACAAATTTAGTGGCTTGTGGGGAGAAGAATCTCCCAGATTCTTTTCAAAGTTTGATTAAAAAGAAGCATGAAGAGAAAGGTTTAGACAATGGGGTTGGTCTTGACATTAAATGGAGAGTTCTGAATTGGAAATTAGCTGCTTCTGCTGAAATTAGGCCATTGCTTTCGAAGGCTGTTGCCATTTTCCATGAGAGGTTTGATCCTATAGTTGATTCTTCCTCTGGCCGTGATTTCATTCCAACAATGATATATGGAAGGAACATCCGGGGCCAAGATTTTGGTGGAATGTACTTTGTCGTGTGTGCTGCAATATTTCGTGTCTTTGGGGCGGAAGTAGCAGAGCTTCCGTTAGTAGCAACAACTGCTGATCACCAAGGACAGGGCTACTTTCAATGCTTGTTTTCATGCATTGAGAATCTACTTGGATCTTTAAACGTGAAAAACTTTGTCCTACCTGCTGCTGATGAAGCTGAATCAATATGGACTAGTAAATTTGGGTTTACAAAGCTAGGGCTGGAGGAGATCAACAATTATAAGAAATTTTATCACATGATGATATTTCAAGGGACCTCAGTACTGCAGAAGCCCGTTCCTTTTGCACCCTGA 3105 0.4522 MAKGTDSDEFVMLSRVRTGLKREFAFAMKAQSEIGGGSLGRTRASKNRNEVPVQTAPARKRSRKSASVEEDAVVKNAEDVAVVKGAEDVVGDAMSEEDAKSDVVDLASDDEPKNNQEGESVAAVPICEEEPKSDVVVETVINEEEPRVVIESLKKEEVNNDEIAQKKEDEVNNDEIAQPLCETGVKEDLQETVVKEEDLQQTGVKEEDLQQTGVKEEVLQDMEKGAAPDEKSLEKGSASEENCGTKGAVPVLVSDKKPKKKMPLEKPMRRFTRSALKEKSDETKVINDGEHTSADIDDNVKMETEASPLTTTPTPSKTPKSSSKKFPTKLKDLLATGIIEGLPVKYVRGTKARKPGDAGLQGEIRGSGILCYCGSCKGVEVVTPTVFELHAGSANKRPPEYTYLENGNTLRDVMNACWSFPLETLEEAVQKVLGHFTMKKSTICLNCRASMSDDGKGVSRLVCDSCMELKDSQPSPPQTAMASSCAPQTAMASSCAIQSAMASSCAPQTAMASSCAPQTAKASSCAPQTTMANCYSPQTAVASSKSVSSAFQPRSPEPVMVPKSLNNGIKHSESRGKSQGRLTRKDLRLHKLVFEEDVLPDGTEVAYYAHGKKLLVGYKKGYGIFCTCCNSEVSASQFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSKDRRFSTTDNDDLCSICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNLFQKDRHGQHYVNALAAGRIEGTDPFEQINRRCIRVVKTVEIDHGGCALCRCHDFSKIFGPRTVIICDQCEKEYHVGCLKEHNMQNLEKLPEGNWFCNTSCSQIHAALTNLVACGEKNLPDSFQSLIKKKHEEKGLDNGVGLDIKWRVLNWKLAASAEIRPLLSKAVAIFHERFDPIVDSSSGRDFIPTMIYGRNIRGQDFGGMYFVVCAAIFRVFGAEVAELPLVATTADHQGQGYFQCLFSCIENLLGSLNVKNFVLPAADEAESIWTSKFGFTKLGLEEINNYKKFYHMMIFQGTSVLQKPVPFAP 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi511g00026 1034 CDD PHD1_AIRE 683 723 - -
Sebi511g00026 1034 MobiDBLite consensus disorder prediction 35 72 - -
Sebi511g00026 1034 Coils Coil 153 173 - -
Sebi511g00026 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 670 754 IPR013083 -
Sebi511g00026 1034 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 932 1015 IPR016181 -
Sebi511g00026 1034 MobiDBLite consensus disorder prediction 304 323 - -
Sebi511g00026 1034 ProSitePatterns Zinc finger PHD-type signature. 684 723 IPR019786 -
Sebi511g00026 1034 PANTHER AUTOIMMUNE REGULATOR 121 1030 - -
Sebi511g00026 1034 MobiDBLite consensus disorder prediction 219 325 - -
Sebi511g00026 1034 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 670 747 - -
Sebi511g00026 1034 SUPERFAMILY FYVE/PHD zinc finger 765 824 IPR011011 -
Sebi511g00026 1034 Pfam Tify domain binding domain 362 417 IPR032308 -
Sebi511g00026 1034 Pfam Tify domain binding domain 617 665 IPR032308 -
Sebi511g00026 1034 ProSiteProfiles Zinc finger PHD-type profile. 681 726 IPR019787 -
Sebi511g00026 1034 MobiDBLite consensus disorder prediction 219 237 - -
Sebi511g00026 1034 MobiDBLite consensus disorder prediction 546 582 - -
Sebi511g00026 1034 SUPERFAMILY FYVE/PHD zinc finger 671 725 IPR011011 -
Sebi511g00026 1034 MobiDBLite consensus disorder prediction 253 302 - -
Sebi511g00026 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 767 829 IPR013083 -
Sebi511g00026 1034 Pfam PHD-finger 684 725 IPR019787 -
Sebi511g00026 1034 SMART PHD_3 683 724 IPR001965 -
Sebi511g00026 1034 SMART PHD_3 774 827 IPR001965 -
Sebi511g00026 1034 Gene3D - 869 1028 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi511g00026 Sebi-Chr511 649176 656171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi511g00026 327 1030 PHD Transcription Factor Family AT2G36720 46.314 0.0 633
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi511g00026 TDBD 2.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi511g00026 - - pcin:129313514 1221.84