Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi511g00023 ATGGCTGTTGCTGGACTGCAAAATGCTGCCGTGCCCGTGCTTGAGTCTACTTTCCATAGGGACTCCAATTCTCAGTCACCAGGGAGGCAAGGAGATGGAGGGAGGGGAGGCACCCGGTCATCTTCACTCTTGCAAATGTGGAGAGAGATTGAAGATGAGCAGGTGGTGAGGCAAGTTCAAGGAAGACCTGGGGAAGTATTAATTCGACAAAGGAGTGATGGGTTGGCTGCAGACCTCCCACAGGAAAATATGCAAGATGGCCACCAGAGGGAAGGGCATGTGACAGAAGATGCAGTTTTGGGTGAGAATGAATCAGAAACATGGTCACAGTCACAAAGTCAGAATGGGTCTCATGATGAACAGGAGGAATCGAACAATTTTAGCCGTGAAAACTCTTCTGATATTGGAGAAATTGAAAGGGAAAGAGTGAGGCAAATTTTCAGGGAATGGATGAATAGTGGTTCTTCTAGGGATCATGCATCAAGTATTTCCCGAGGAAATAGTGGTTCAAGGGGAGAATGGCTTGGGGAAACTGAGCAGGAAAGGGTGAGTATTGTAAGGGAATGGGTACAGATGAGTAGCCAGCAGAGAGGTGTTTCGTTGGGCGAAAATAGGGAAGAACAATCTGCTGAATTTGGTACCCAAATTGAATGTGTTCGTGATGGATCTGTTGTCAATCAGAATGAAGGCCAAACTGAGCATACACGTAGAGGAATCCGTAAATTACGTGGTCGGCAGTTTCTGCTTGATATACTTAAGAAGGCTGAGATGGAAAGGCAAAGAGAAGTTCAGGAATTGTTGGACCATCGGGCCGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATTGGTTGATAATAACAGGCCCACTTCCATTTCAGACAGTGAATTAGGCTTATTGAGACAAAAACAGACTGTATCAGGTCTAAGGGAAGGATTCTTTTTTAGAAAGGACAATTCTGGTTGCAGTCAAGCAACCGGCAACCTATCTGATACGTCATCTGACATTGATATTGATGTTAATACAATTGAACAAACTGGATCTACCAGTTCACAAGTGGTCCCCACTGTACATTCTGAACAATCAGAGCCTAATAATATGGGAAGTGACAGACTTTGTATATCTAGTGGTCAGATTTGTTCACAAGGAACTGCTTGTGAGAATTTAGATTTGCAAGACTCTTCTGCTCATGTAGAAACAAGAGATTGGGAATCATCTTCCAGTATCAGGGCTGAAAGAAGAGATGGCACTGAACAAAATGTTGATATGATGCCAACTGCTCATGTAGAAACAAGAGATTGGGAATCGTCTTCCAATATGGAGCATAGCAATATGCAAGAACTAAGTGGGGTGCATGCCGAGCAATCTCAACTGGGTGATATAACTGGTGATGAAAGCAATTTATCAAATCCCAACAATCATGTAGAGGGCAATATTGTTGATGATGTAAATTCAATAGAATCTGTTGTTCTGGAAAGAGAGGAACAGGAAGAAGTGATTACTGAAAATGAAGGAATTGACTGGCATCAAACCAACGTTGAATGGAGAGATAGCGCCCAGGAAAGTGTGGATGATAATCAGCTCAATAGCACATCAAATGAATGGCCCCAGAACATCCTGGGAAATGAAGATGTAGAAAATTCTCGTCTGCAAGAGCAAGAAGCCTCTGAAGTGTGGCAAGAAGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTGGGAGGACCTTCTGATAATGAAGTAACTCCAGTTGGTAGAATTCGTGGATTTTATTTCCCAGAAGATGACAATGTGTACAGCGTTGAACTCAGGGAACTGCTAAGTAGGAGAAGTGTCTCAAACCTCTTACGCAGCACTTTTCGTGAAAGTCTTGACCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCATGTTGAATGGGAGCTGCAAGAAACAACCCCTTCTTCTCCCTTGGCAGAACGAGACCTGGAGCAGCAGGGTAGGGATCGGATCATTGGTCGGGATACTGTTAATAGCTCACTTAACCTACCCTTGCCACCAACTCCTCCTCCTTTGCCTCTATGGGATCGGCACTCACGTCATGACAACTGGTCACAGAATGACATAAATAATCAGCGCCTAGGAATGGAGTGGGACATTATTAATGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAGAGAATGCTGGAGACCTGCATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAAGTCTCTGCAGCCCTGAATCGCTCAACTGGTTCATCAGTCATAGTCGTGGCTGACCAAGTTAAATTCATCACAGGAATACATGACCATGTTTCTCCAGACGATAAATCTAAATGGGAGTGTGTGAGAAAAGGACTTTGCTGTATATGCTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCCAATGATTTGCTCCAAAGTAGAAGAAAGTGTCCAATGTGTCACGCACCAGTGGTGGAAGTGATACGTGCTTATTCTATACAATAA 2595 0.4362 MAVAGLQNAAVPVLESTFHRDSNSQSPGRQGDGGRGGTRSSSLLQMWREIEDEQVVRQVQGRPGEVLIRQRSDGLAADLPQENMQDGHQREGHVTEDAVLGENESETWSQSQSQNGSHDEQEESNNFSRENSSDIGEIERERVRQIFREWMNSGSSRDHASSISRGNSGSRGEWLGETEQERVSIVREWVQMSSQQRGVSLGENREEQSAEFGTQIECVRDGSVVNQNEGQTEHTRRGIRKLRGRQFLLDILKKAEMERQREVQELLDHRAVSHFPHRNRIQALLRGRFLRNDRLVDNNRPTSISDSELGLLRQKQTVSGLREGFFFRKDNSGCSQATGNLSDTSSDIDIDVNTIEQTGSTSSQVVPTVHSEQSEPNNMGSDRLCISSGQICSQGTACENLDLQDSSAHVETRDWESSSSIRAERRDGTEQNVDMMPTAHVETRDWESSSNMEHSNMQELSGVHAEQSQLGDITGDESNLSNPNNHVEGNIVDDVNSIESVVLEREEQEEVITENEGIDWHQTNVEWRDSAQESVDDNQLNSTSNEWPQNILGNEDVENSRLQEQEASEVWQEDGGFQEAVEIWLGGPSDNEVTPVGRIRGFYFPEDDNVYSVELRELLSRRSVSNLLRSTFRESLDQLIQSYVERQGHAHVEWELQETTPSSPLAERDLEQQGRDRIIGRDTVNSSLNLPLPPTPPPLPLWDRHSRHDNWSQNDINNQRLGMEWDIINDLRIDMVRLQQRMNNMQRMLETCMDMQLELQRSIRQEVSAALNRSTGSSVIVVADQVKFITGIHDHVSPDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANDLLQSRRKCPMCHAPVVEVIRAYSIQ 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi511g00023 864 Coils Coil 728 755 - -
Sebi511g00023 864 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 441 864 - -
Sebi511g00023 864 MobiDBLite consensus disorder prediction 101 137 - -
Sebi511g00023 864 MobiDBLite consensus disorder prediction 153 176 - -
Sebi511g00023 864 CDD mRING-HC-C3HC5_NEU1 812 861 - -
Sebi511g00023 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 799 862 IPR013083 -
Sebi511g00023 864 ProSiteProfiles Zinc finger RING-type profile. 812 851 IPR001841 -
Sebi511g00023 864 MobiDBLite consensus disorder prediction 14 40 - -
Sebi511g00023 864 MobiDBLite consensus disorder prediction 153 174 - -
Sebi511g00023 864 MobiDBLite consensus disorder prediction 102 121 - -
Sebi511g00023 864 MobiDBLite consensus disorder prediction 17 40 - -
Sebi511g00023 864 MobiDBLite consensus disorder prediction 122 137 - -
Sebi511g00023 864 Pfam Zinc finger, C3HC4 type (RING finger) 809 856 - -
Sebi511g00023 864 MobiDBLite consensus disorder prediction 358 379 - -
Sebi511g00023 864 SUPERFAMILY RING/U-box 811 857 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi511g00023 Sebi-Chr511 603832 609450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi511g00023 760 858 C3H Transcription Factor Family AT3G06140 28.440 1.32e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi511g00023 - - gmx:100804887 1219.53