Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi511g00004 ATGGCGGAGGACCGCAATGAGGCCAGTGATTTCAGTTCGGAGGACGAAGGCACTGAGGATTACAGGCGTGGAGGGTACCATGCGGTTCGGATTGGGGACACTTTCAAGAATGGGTGCTATGTGGTGCAAAGCAAGCTCGGTTGGGGTCATTTTTCCACCGTGTGGCTCGCTTGGGATACTCAGAAATCGCGATATGTTGCCTTGAAAATTCAAAAGAGTGCTCAGCACTACACTGAAGCAGCGTTGGATGAAATAAAGATTCTCAAACAAATTGCTGATGGGGATCCAGATGACAATAAATGTGTTGTGAAGCTTTTGGATCACTTTAAGCATTCAGGGCCTAATGGCCAGCATGTTTGTATGGTTTTTGAATTCCTTGGTGATAACCTTCTCACCCTTATCAAGTACAGTGATTATCGAGGGGTTCCCCTTCCCATGGTCAAAGAAATTTGTTTCCATGTTTTGGTTGGTTTGGATTACTTGCATCGTGAGCTTTCTGTAATACACACTGATTTGAAGCCAGAGAATGTCTTGCTTCTGTCTCCAATAGATCCATCTAAGGATCCTAGAAAATCAGGTGTTCCACTTATCCTTCCAAACACCAAGGACAAGATTGTGGCCAAGAATGGGACAACAAAAGATGATAAAAGTTTGAATGGAGATCTGACCAAGAACCAGAAAAAGAAGATACGAAAAAAGGCTAAAAAAGCTGCTCAGGGTTGTGTTGGGAAGGAAAATCCTGAGGAAGCAGAGGAGGATTCTAAAGCACCTGAGCAAGATGGTTGTAGTAATGATGTGAAACCAGTTGTAGAATCTGGTGAAGGTAAACCTAATAGTCCTGTGTGTAAAGATGAATCAACAAAGACACTTGAAACTAAGGATGTTCCACAAGGAAGTCATGGTCATAGGAGAGGTAGCCGCTCTACCAGAAAGAAGTTGCTTGCAGCTGTTGATCTTAAGTGCAAGCTAGTTGATTTCGGTAATGCTTGTTGGACATATAAACAGTTCACAAATGATATTCAGACAAGGCAATATAGATGTCCTGAGGTTCTTCTTGGATCTAAATACTCAACTCCAGCAGATCTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCTCATAGTGGGGACAACTATGATAGGGATGAGGATCATCTTGCGTTGATGATGGAGCTTCTTGGAATGATGCCTCGCAAGATTGCACTTGGTGGTCGCTATTCCCGGGACTTTTTCAATAGATACGGTGATTTGAGGCACATTCGCCGGTTACGTTTCTGGCCTCTTAATAAGGTCCTGATGGAGAAATATGATTTCACTGAGCAAGATGCAATTGACATGGCTGACTTTCTTGTTCCATTACTTGATTTTGTCCCTGAAAAGAGGCCAACAGCTGCTCAGTGCCTTAATCATCCATGGATCAGTGCAGGTCCTCGGACTCGTGAGCCCTCATTGACAAATCTGCAACCTGATGATGCTATTGACAGGGAAACGTCTGAAAAGATGAGGAGGGAAAAGGCTGAACAGGAGGCTGTGGAAGTTGGTATGGGGAATATCGTCATTGATGGAACTCCAAAGCCACTCAAAGATTCCCAGTCCACAAAGCCATCAGAATAG 1638 0.4389 MAEDRNEASDFSSEDEGTEDYRRGGYHAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTQKSRYVALKIQKSAQHYTEAALDEIKILKQIADGDPDDNKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLPMVKEICFHVLVGLDYLHRELSVIHTDLKPENVLLLSPIDPSKDPRKSGVPLILPNTKDKIVAKNGTTKDDKSLNGDLTKNQKKKIRKKAKKAAQGCVGKENPEEAEEDSKAPEQDGCSNDVKPVVESGEGKPNSPVCKDESTKTLETKDVPQGSHGHRRGSRSTRKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFTEQDAIDMADFLVPLLDFVPEKRPTAAQCLNHPWISAGPRTREPSLTNLQPDDAIDRETSEKMRREKAEQEAVEVGMGNIVIDGTPKPLKDSQSTKPSE 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi511g00004 545 MobiDBLite consensus disorder prediction 1 20 - -
Sebi511g00004 545 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Sebi511g00004 545 CDD STKc_SRPK 29 481 - -
Sebi511g00004 545 SMART serkin_6 40 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi511g00004 545 Pfam Protein kinase domain 318 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi511g00004 545 Pfam Protein kinase domain 40 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi511g00004 545 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 10 505 - -
Sebi511g00004 545 Gene3D Transferase(Phosphotransferase) domain 1 123 482 - -
Sebi511g00004 545 MobiDBLite consensus disorder prediction 286 301 - -
Sebi511g00004 545 MobiDBLite consensus disorder prediction 205 309 - -
Sebi511g00004 545 FunFam CMGC/SRPK protein kinase 26 125 - -
Sebi511g00004 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Sebi511g00004 545 MobiDBLite consensus disorder prediction 486 545 - -
Sebi511g00004 545 MobiDBLite consensus disorder prediction 245 260 - -
Sebi511g00004 545 MobiDBLite consensus disorder prediction 500 518 - -
Sebi511g00004 545 FunFam Serine/threonine-protein kinase SRPK-like protein 311 481 - -
Sebi511g00004 545 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Sebi511g00004 545 SUPERFAMILY Protein kinase-like (PK-like) 35 487 IPR011009 -
Sebi511g00004 545 MobiDBLite consensus disorder prediction 207 225 - -
Sebi511g00004 545 ProSiteProfiles Protein kinase domain profile. 40 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi511g00004 Sebi-Chr511 27975 32616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi511g00004 1 533 EF-hand Containing Proteins AT5G22840 68.207 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Sebi511g00004 Pkinase 4.9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi511g00004 K08832 - gmx:100809984 980.704