Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi510g00002 ATGGAAAACTCAGACTGTGACGAACCCGAAAAGAAGAGGCCTCATCTCACCTCTGTTTCTTCTCGCATGGCTCGAAACTCAACCAATCTTCCTACCAACAACAAAACTGTTGATGCAAGTGTCTTACAGTTCCAGAATCAGCAGCTTGTACAACAGATAGACATCCAAAAACATGCTTTGCAGGATCTTGAAGGAAAAATTAGAGAATTAAAAGAAAGGCAAAATTCTTATGATGACTTGTTAATTGCATTGAATCAACACTGGATTCAGTTGGTTGATGATACGATTCTTCTTGGGATACAAGCTGGGAGAGGCAAAGACACATTGCAAACACTGGCTTGCCTTGATAATCCTCAAGGTTCTCTTCCTTTGTGTCCTGCGGAGGATATATTTCTATGTAGACTAATCCAGAAAGATTCTATTGAAGGAAACAGTAATGATGAGGTAATTAATTATGTGGAGGAAGCCCTTGCTTTGCGTCGGTCATCTACAGGGGAGTTGTTGAAACGCGTTCAAGATACCATTGATGATCAGATGGAAAGAATTGACAGCATAGCCCAGGTTTTACATGGAGATTTATCTTCAGAAGATGCTATCATCCAAATGTCTAAGATTGATGATATGACGAAAGAGGAAGCAAATAATTTGCGTGAAGTGATTGATTCTCTCCATGCGAAACATAAAGAGTACACTGTTGGTATTCAGAATTATATTAGCGAGTGCCTAAAAGATCAATCTGACATTAAACACCTTACAGGTGAACTTGACGAGGTCGTGGCTGAACTTGAAGAAAGTAGAAGAAAACTAGTCAGTCTGAAAATGCAAAAAGATGCAGCGGTAGGGGCAAATTCCCCCAATGCTGATGCAGTGAATGGAAACTTGTCTCCTGAAAAGCCTGCAGACAGGACCATGGGTTTGCGTGAATTGAAGGATTCAATTGAGGAAGCAAAGATAGTGGATGCCGATCGTCTTTCTGAGCTTCTAGATGCCCAGGAAGACAATCAGACCTTGACGAAGCAACTCCAAGATCTTCAGAATGAACTAAATGATGAGAAGTATGTGCGCTCTTCCCGAATATACTCTTTGGCAAATGATCAACTACAACATTGGATGACTGAATTGGACCGATATAAAATGTTAACCGAGTCTCTACAGGCTGGCAGTGCTCATGTCACAAAATGGGAGAAGGAACTGAATTTGAAATTGGAGTCTGCTGATAATGCAAGGCATATCCTTGACAATTCTGACCATAGGATTGATGAGCTAGAGCTTCAGTTGCAGAAGTGTATTATTGAGAAGAATGATCTTGAAATTAAGATGGAAGAGGCTATACAGGATACTGGGAGAAAAGATATCAAGTCTGAATTTCATGTGATGGCTTCAGCTTTATCTAAAGAAATGGGGATGATGGAAGCTCAGTTGAAGCGATGGAAGGATGCAGCTCATGAGGCTGTATCATTACGTGAGAAAGCACATTCACTAAGAGCGTTGTTGAGTGGGAAGACTACTGAACTTAAGAGCCTTACAAACAAATGTGCTGAACAGGTTTCAGAAATCAAGTCTTTAAAAGCATTGATTGAAAAGTTACAGAAGGAGAATCAGGAGTTAGAATTTGTTCTGGATATGCATGGCCAGGAGAATTATGATAAAAGATATCTGGCAGAAGTTAGAGAATCTGAAAGTAAAGCTCGTGCTCAAGCTGAAATGCTGAAAAATGCTTTAGAGGAACATGGTCTAGAGTTGAGAGTAAAAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCTGCTGCAGAAGCTGAAATAGAGGACTTAAGGGTAAAGCTGGATGCATCTGAGAGAGATATCTTAGAGCTGACTGAGGCTGTTAAAGTTAAAGATGCTGAGGCAGAGGCATATATATCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAACATCTGTTGCAGCAGGTGACTGAGAGGGATGACTATAATATTAAGCTTGTATCAGAAAGCGTAAAGACAAAACAGACACATAGCACTTTACTGTCTGAGAAACAGGCCTTAGCAAAGCAGCTTCAACAAATTAATTCTTCTATAGAAAATTCAAAGACAAGGATTGCACACAGTGAAGAGCAGATGAAAGGTATTCTGTCAGAAGCCATTAAATGTGTTCAAGATGAAAAATACTGTGCAGTCAGCTTGGAATTTGCAAAGTGGGAATTGGCTGATTCTGAGAAAGAGTTGAAATGGCTCAAGTCTGCTGCTTCATCTTCAGACAAAGAATATGATCAAGTTCAGAAAGATATAGAAGCTATTGAAACGGAATTGGATAGTGAAAGGAGTTCACGGGAGAAGCTTGAGGAAGAACTAAGGGAATTGAACAGCAAAATAGCTGAGCTGAGTTCTGAAACTGGAGAAACCACAGTACAAAAACTTGAAGAAGAAATAAGAGTTTGCAAGAACATGATCAAGTGTACTGTCTGTTCTGATCGTCCAAAGGAGGTTGTGATTGTCAAGTGCTATCATCTGTTCTGCAATCCTTGCATACAAAGAAATCTTGAGCTGCGCCACCGCAAATGTCCTGCATGTGGAACAGCATTTGGACAGAGTGATGTTCGGTTTGTTAAAATATAA 2643 0.4011 MENSDCDEPEKKRPHLTSVSSRMARNSTNLPTNNKTVDASVLQFQNQQLVQQIDIQKHALQDLEGKIRELKERQNSYDDLLIALNQHWIQLVDDTILLGIQAGRGKDTLQTLACLDNPQGSLPLCPAEDIFLCRLIQKDSIEGNSNDEVINYVEEALALRRSSTGELLKRVQDTIDDQMERIDSIAQVLHGDLSSEDAIIQMSKIDDMTKEEANNLREVIDSLHAKHKEYTVGIQNYISECLKDQSDIKHLTGELDEVVAELEESRRKLVSLKMQKDAAVGANSPNADAVNGNLSPEKPADRTMGLRELKDSIEEAKIVDADRLSELLDAQEDNQTLTKQLQDLQNELNDEKYVRSSRIYSLANDQLQHWMTELDRYKMLTESLQAGSAHVTKWEKELNLKLESADNARHILDNSDHRIDELELQLQKCIIEKNDLEIKMEEAIQDTGRKDIKSEFHVMASALSKEMGMMEAQLKRWKDAAHEAVSLREKAHSLRALLSGKTTELKSLTNKCAEQVSEIKSLKALIEKLQKENQELEFVLDMHGQENYDKRYLAEVRESESKARAQAEMLKNALEEHGLELRVKAANEAEAACEQRLSAAEAEIEDLRVKLDASERDILELTEAVKVKDAEAEAYISEIETIGQAYEDMQTQNQHLLQQVTERDDYNIKLVSESVKTKQTHSTLLSEKQALAKQLQQINSSIENSKTRIAHSEEQMKGILSEAIKCVQDEKYCAVSLEFAKWELADSEKELKWLKSAASSSDKEYDQVQKDIEAIETELDSERSSREKLEEELRELNSKIAELSSETGETTVQKLEEEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi510g00002 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 879 IPR013083 -
Sebi510g00002 880 Coils Coil 405 446 - -
Sebi510g00002 880 Coils Coil 758 806 - -
Sebi510g00002 880 Coils Coil 505 546 - -
Sebi510g00002 880 Coils Coil 553 576 - -
Sebi510g00002 880 MobiDBLite consensus disorder prediction 1 17 - -
Sebi510g00002 880 MobiDBLite consensus disorder prediction 19 34 - -
Sebi510g00002 880 MobiDBLite consensus disorder prediction 282 301 - -
Sebi510g00002 880 Coils Coil 583 624 - -
Sebi510g00002 880 PANTHER RING FINGER PROTEIN-RELATED 9 880 IPR013956 GO:0004842|GO:0010390
Sebi510g00002 880 MobiDBLite consensus disorder prediction 1 34 - -
Sebi510g00002 880 Coils Coil 688 715 - -
Sebi510g00002 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 869 - -
Sebi510g00002 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Sebi510g00002 880 Coils Coil 46 80 - -
Sebi510g00002 880 Coils Coil 327 354 - -
Sebi510g00002 880 CDD RING-HC_Bre1-like 820 876 - -
Sebi510g00002 880 SUPERFAMILY RING/U-box 827 871 - -
Sebi510g00002 880 SMART ring_2 828 866 IPR001841 -
Sebi510g00002 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Sebi510g00002 880 Coils Coil 248 275 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi510g00002 801 875 RAD5 or RAD16-like Gene Family AT5G05130 27.381 3.44e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi510g00002 K10696 - gmx:100796610 1419.45