Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00158 ATGTTACATGCATTTTGGCCAATATGCTTTCACATAATACTACTACTATTTGTTTTGAACTCATTCTGTTTTGGCCCCAACACAACTGCCTCTGCATCAGGAAATGAGACTGACCATTTGGCACTGCTCAAATTCAAGGAAGCAATATCCAGTGACCCATTTGGAATCCTAGATTCTTGGAATAGTTCTACCCACTTTTGCAAGTGGCATGGAATCACATGCAGCCCCATGTATCAAAGAGTTACAGAGTTGAACCTAGAAGGATATCAGTTGCATGGATCCATATCTCCTCATGTTGGCAATCTCTCTTTTATGAGAAACTTCAATATCAGAAACAACAGCTTCCATGGAATAATCCCTCAAGAACTGTTCCATTTAGTGCAATTACAGCTACTTCGTCTCAACAATAACTCCTTGATTGGGGAAATTCCTACAAACTTGACAAGTTTGTCTGATCTCAAAGGCTTTTACTTGTCAGGGAACAATCTCATTGGCAGAATACCAATTGAAATTGGCTCTCTTAGGAAGCTCCAAGAAGTATTCATTTGGAACAACAAATTAACAGGTGAAATTCCACCTTCCTTAGGGAATCTTTCATCCCTTACTGTTCTTAATGTGGGTTCCAATAACTTGGAGGGAAATATTCCACAAGAATTATGCTTCTTGAAAAACTTGTCATCCATATCAGTGGGTATAAACAAACTATCTGGTAAACTTCCTTTCTGTCTTTACAATATGTCATCTCTCACTCTATTCTCTGTTGCTCTGAACCAATTTAATGGCTCTCTTCCACCCACAATGTTCAACACCCTTCCCAATCTCCAAACACTTTTCATTGGTGGGAACCAAATCTCAGGTCCAATCCCATCTTCCATCACAAATGCATCTGTCCTTCAAAAGTTTGATATCACTCAAAACCATTTTGTGGGACAAGTTCCAAGTTTAGGAAAGCTAAAAGATCTTGGTCTCCTAGGTTTGGCTAAGAACAAGCTAGGAAATAACTCAACTAAAGATTTGGAGTTTTTAAAGTCATTGACAAATAGTAGTAAGTTGTATGTGGTTGATATATCCTACAACAATTTTGGAGGCCATTTACCAGATTCCTTGGGAAACATGTCAAACCAAGTCAATAACCTATATCTTGGGGGCAATCATATATCAGGAAATATTCCTGTAGCATTAGGAAATCTAGTTAGCTTATTTCTCTTGACCATGGAAAATAACCGTTTTGAAGGGACAATTCCAGCTACTTTTGGGAAGTTTCAAAAGATGCAAGTGTTAGAATTAAGTGGAAACCAATTGTCAGGAGATATACCAGCCTTCATAGGTAATCTCAGTCAGTTGTCTTATTTGGGTTTAGGACATAATATGTTAGAAGGAAATGTTCCTCCAAGTATAGGAAACTGTCAAAAGTTACAACACCTAGACCTTTCACACAACAACCTTAGAGGAACCATACCTGTGGAGGTTTTTAGTCTTTTCTCTTTAACAAACTTATTGGACTTGTCACAAAACTCATTTAGTGGTACTATAGTGGAAGAAGTAAGCATGCTAAAAAATATTGAAACATTGAATGTCTCTGAGAATCATCTGTCTGGTGATATTCCTAGAACCATTGGAGAATGCATAAGCTTGGAGTACCTTTATTTGCAAGGAAATTCCTTAAATGGAGTCATACCATCTTCTTTGGCTTCACTCAAAGGCCTTAGACGTTTAGACTTATCAAGAAACCGTTTTTCTGGATCAATTCCTGAAGGTCTACAGAATATTGCTTTCTTAGAATACTTCAATGTTTCTTTTAACATGTTGGATGGTGAGGTACCAACTAAAGGTGTCTTTCAAAATGCAAGTGAGGTGGTGGTAACTGGAAACAATAACCTTTGTGGAGGTATTTCAAAGCTGCATCTACCACCATGCCCTGTCAAAGGTAAGGAACATGCAAAACACCATAGTTACAAGCTGATAGCAGTGATAGTTAGTGTGGTTGCTTTTCTTCTAATACTTCTATTTATTCTAACTATCTATTGTATGAGGAAAAGAAACAAGAAACCAACTATTGATTCACCAGAAATTGACCACCTGGCTAAGGTTTCTTATGAAAACCTATACAATGGAACTGATGGATTCTCAACTAGAAACTTGATAGGATCTGGAAATTTTGGACATGTCTACATAGGAACTCTTGAGTCAGAAGATAGAGTTGTTGCCATAAAGGTCCTAAACCTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTGCTGAATGTAATGCACTCAAAAATATTAGGCATCGAAATCTGGTTAAGATCTTAACATGCTGTTCTAGTACAGATTACAAAGGTCAAGAATTTAAAGCTTTGGTTTTTGAGTACATGAAAAATGGAAGCTTAGAGAGTTGGTTGCATCCAGAAACAGAAATTGCAGATCCACAAAAATCATTGAGCCTTGAGCAAAGGTTAAATATTATTACTGATGTTGCTTTAGCATTTCATTATCTTCACTATGAATGTGAGGAGCCAGTCATTCATTGTGATTTAAAGCCTAGCAATGTTCTTATTGATGAATGCATGGTAGCACACGTGAGTGATTTTGGCTTAGCAAGATTGCTCTCAAGAGTTGGAGTATCTCTGATGCAAAGTAGCACAATTGGAATTAAGGGGACAGTTGGTTATGCACCTCCAGAGTATGGAATGGGTTCTGAGGTGTCAATTGAAGGTGACATCTATAGCTTTGGCATTCTAGTTCTTGAGATGTTAACTGGAAGGAGGCCAACAGATGAAATGTTTGAAGATGGTCATAATCTCCATAATTATGTTAAAATTTCAATTTCAAATGACCTTTTGCATATAGTGGATCCAGCTATTCTCCACAATGGATTAAAATGGGCTACTGACAGTGGGGACCTTGGCATTATACATCCTAATGTAGAGAAATGTTTACTTTCACTTTTTAGTATTGCACTTGCCTGTTCAGTGGAATCTCCAAAAGAAAGAATGAGTATGGTTGATGTCATAAGGGAGCTTAATATTATCAAGAGTTTCTTTTCAACTGGGTTTTAA 3057 0.3729 MLHAFWPICFHIILLLFVLNSFCFGPNTTASASGNETDHLALLKFKEAISSDPFGILDSWNSSTHFCKWHGITCSPMYQRVTELNLEGYQLHGSISPHVGNLSFMRNFNIRNNSFHGIIPQELFHLVQLQLLRLNNNSLIGEIPTNLTSLSDLKGFYLSGNNLIGRIPIEIGSLRKLQEVFIWNNKLTGEIPPSLGNLSSLTVLNVGSNNLEGNIPQELCFLKNLSSISVGINKLSGKLPFCLYNMSSLTLFSVALNQFNGSLPPTMFNTLPNLQTLFIGGNQISGPIPSSITNASVLQKFDITQNHFVGQVPSLGKLKDLGLLGLAKNKLGNNSTKDLEFLKSLTNSSKLYVVDISYNNFGGHLPDSLGNMSNQVNNLYLGGNHISGNIPVALGNLVSLFLLTMENNRFEGTIPATFGKFQKMQVLELSGNQLSGDIPAFIGNLSQLSYLGLGHNMLEGNVPPSIGNCQKLQHLDLSHNNLRGTIPVEVFSLFSLTNLLDLSQNSFSGTIVEEVSMLKNIETLNVSENHLSGDIPRTIGECISLEYLYLQGNSLNGVIPSSLASLKGLRRLDLSRNRFSGSIPEGLQNIAFLEYFNVSFNMLDGEVPTKGVFQNASEVVVTGNNNLCGGISKLHLPPCPVKGKEHAKHHSYKLIAVIVSVVAFLLILLFILTIYCMRKRNKKPTIDSPEIDHLAKVSYENLYNGTDGFSTRNLIGSGNFGHVYIGTLESEDRVVAIKVLNLQKKGAHKSFIAECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVFEYMKNGSLESWLHPETEIADPQKSLSLEQRLNIITDVALAFHYLHYECEEPVIHCDLKPSNVLIDECMVAHVSDFGLARLLSRVGVSLMQSSTIGIKGTVGYAPPEYGMGSEVSIEGDIYSFGILVLEMLTGRRPTDEMFEDGHNLHNYVKISISNDLLHIVDPAILHNGLKWATDSGDLGIIHPNVEKCLLSLFSIALACSVESPKERMSMVDVIRELNIIKSFFSTGF 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00158 1018 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Sebi50g00158 1018 Gene3D Transferase(Phosphotransferase) domain 1 791 1015 - -
Sebi50g00158 1018 ProSitePatterns Protein kinases ATP-binding region signature. 715 738 IPR017441 GO:0005524
Sebi50g00158 1018 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 37 145 - -
Sebi50g00158 1018 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 791 1017 - -
Sebi50g00158 1018 ProSiteProfiles Protein kinase domain profile. 709 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00158 1018 Pfam Protein kinase domain 711 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00158 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 840 852 IPR008271 GO:0004672|GO:0006468
Sebi50g00158 1018 FunFam LRR receptor-like serine/threonine-protein kinase EFR 337 645 - -
Sebi50g00158 1018 FunFam Leucine-rich repeat receptor protein kinase EMS1 146 242 - -
Sebi50g00158 1018 PANTHER LEUCINE RICH REPEAT KINASE 2 344 1012 - -
Sebi50g00158 1018 Pfam Leucine rich repeat 544 603 IPR001611 GO:0005515
Sebi50g00158 1018 Pfam Leucine rich repeat 423 482 IPR001611 GO:0005515
Sebi50g00158 1018 SUPERFAMILY Protein kinase-like (PK-like) 685 1009 IPR011009 -
Sebi50g00158 1018 Gene3D Phosphorylase Kinase; domain 1 690 790 - -
Sebi50g00158 1018 SMART LRR_typ_2 126 150 IPR003591 -
Sebi50g00158 1018 SMART LRR_typ_2 445 469 IPR003591 -
Sebi50g00158 1018 SMART LRR_typ_2 198 222 IPR003591 -
Sebi50g00158 1018 SMART LRR_typ_2 566 589 IPR003591 -
Sebi50g00158 1018 SMART LRR_typ_2 470 493 IPR003591 -
Sebi50g00158 1018 SMART LRR_typ_2 518 542 IPR003591 -
Sebi50g00158 1018 SMART LRR_typ_2 271 295 IPR003591 -
Sebi50g00158 1018 Gene3D Ribonuclease Inhibitor 331 640 IPR032675 -
Sebi50g00158 1018 CDD STKc_IRAK 715 1010 - -
Sebi50g00158 1018 SUPERFAMILY L domain-like 345 629 - -
Sebi50g00158 1018 SUPERFAMILY L domain-like 35 331 - -
Sebi50g00158 1018 Gene3D Ribonuclease Inhibitor 34 319 IPR032675 -
Sebi50g00158 1018 SMART serkin_6 709 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00158 1018 PRINTS Leucine-rich repeat signature 518 531 - -
Sebi50g00158 1018 PRINTS Leucine-rich repeat signature 472 485 - -
Sebi50g00158 1018 ProSiteProfiles Leucine-rich repeat profile. 471 493 IPR001611 GO:0005515
Sebi50g00158 1018 FunFam LRR receptor-like serine/threonine-protein kinase EFR 679 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00158 Sebi-Chr50 2427934 2431100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00158 35 1014 Receptor kinase-like Gene Family AT3G47570 45.921 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi50g00158 Pkinase 2.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00158 - - aprc:113870110 1434.47