Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00156 ATGAAGCCCTTTTCTCTCATATTACCTGCATTCTGGTCTATATGCCTTCACATACTTGTGCTATTATTTATTTTGAGCTCACTCTCGTTTGGCCCAAACGCAACTGCCTCTTCTGCTTTGGGAAACGATACCGACCATTTGGCGTTACTGAAATTGAAGGAATCAATATCCAATGACCCATTTGGAGTGTTGGTCTCTTGGAATGCTTCTATCCATTTATGTGAGTGGCATGGAGTCACATGCATGCACCAAAGAGTAACAGAGTTGAACTTACAAGGATATCAGTTGCATGGATCCTTATCTCCTCACGTTGGCAATCTTTCCTTTCTGACAAACCTTAATCTCAAAAACAACAGTTTCTACGGAAAAATCCCACAAGAATTGGGTCGGTTGTTACAATTGCAGCAACTCTCTCTCACCAATAACTCCTTCACAGGGGAGATTCCAACAAACTTGACAAGTTGCTCTCATCTCAGAGACTTATATTTAGAAGGGAATAATCTGATTGGCAAAATACCAATTGAGATTGGCTCTCTTTGGAAGCTTCAATCATTGGCAGTTGGGAAAAATAATTTAACTGGAGGATTCCCTCCATTTTTAGGGAATCTTTCATCCCTCATCCGTGTCTCGGTGTCTTATAATAACTTAGAGGGAGATATTCAACAACAAATATGTCGCCTCAAAAACCTGGCAATGATAGTAGTGGAAGTGAACAAACTATCTGGTACATTTCCTTTTTGCCTTTACAATATGTCATCTCTTATCGTGATCTCAGCTGCAGGAAATTACTTTGATGGCACTCTTCCACCCAACATGTTCAACACCCTTCCTAATCTCCAATTTTTTGCAATTGGTAGGAATCAATTCTCAGGTCCAATCCCCACTTCCGTTTCAAATGTGTCTACCCTTACACTACTTGATATCGTTGTAAACCATTTTGTTGGAAACGTTCCAAGTCTAGGGAGGCTACAAGATCTTCAGTGGCTAAATCTGGGTAGAAACAATCTAGGTGACAATTCAATGAAGGATTTGGAGTTTTTAAAATCATTGACAAATTGTAGTAAGTTGCAAATGTTAGATATATCCTATAATAATTTTGGAGGTAGTTTGCCAAATTCCATGGGTAATCTCTCCACCCAACTCAACCGACTATATGTTGGGGGCAATCATTTATCAGGAAAAATTCCTGCGGAATTAGGAAATCTAATCAACTTAACTCTTTTGACAATGGAAAGTAACCATTTTGAAGGGTTGATTCCAACTACCTTTTGGATGCTTCAGAAGATACAAGTTTTAGACTTGGGTGGAAACCAACTATCAGGAGTGATACCTACCTTTATAGGAAATCTCAGTCAATTGTTTTATTTGGATTTATCACAAAATATGTTAGAAGGAAATATTCCTCCAAACATAGGAAACTGCCATAAGTTACAATACCTATGCCTTTCACAAAACAGACTCAGAGGAACCATACCCTCTGAGGTTTTTAGCCTTTTCTCATTAACAAACTTACTCGACTTGTCACAAAACTCGTTGAATGGTAGCATACCAAAAGAATTGGGTATGCTGAAAAATATTGATGAGCTAGATGTCTCTGAAAATCATTTGTCTGGTGATATTCCTAGAACCATAGGAGAATGCATAAGCTTAGAGTTCCTTCATTTGCAAGGAAACTCCTTCCATGGAATCATACCATCCTCCTTGGCTTCTCTCAAAGGTCTTCAATATTTAGACTTGTCAAGAAATTTATTGTCTGGACCAATTCCTGATGTTCTGCAGAATATTTCTACTTTAAAACACTTGAATGTTTCTTTTAACATGTTGGATGGTGAGGTACCAACAAAAGGTGTCTTTGGAAATGCAAGTGAGTTAGCTGTGACTGGAAACAACAAGCTTTGTGGAGGTATTTTACAATTGCATCTACCACCATGCCCTGTCAAGGATAGAAAACATTCAGTACATCATAATTCCAAGTTGATAGCCGTGATAATTTGTGTGGTTGCTTTTTTCTTCATTCTGTCATTTGTCCTAGCTTTCTTTTGGATCAGAAAAACAAACAAAAAAACATCTTTCGATTCACCACCAACAATTGATCAGTTGCCCAAGGTTTCATACCAAAACCTTCACCATGGAACCGATGGGTTCTCAGCTAGAAACTTGATAGGATTGGGAAGTTTTGGCTCTGTCTACAAAGGAACTCTTGAGTCAGAAGATAAAATTGTTGCTGTGAAGGTCTTAAACCTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTGCTGAATGTAATGCACTTAAAAGTATTAGACATCGAAATCTTGTTAAGATTTTAACATGTTGTTCCAGTACAGACTACAAAGGTCAAGAATTTAAAGCTCTAGTTTTTGATTATATGAAAAATGGAAGCTTAGAACAATGGCTGCATCCAGGGAAAGTAGATTTTGAGCATCCAAGAACGTTGGACCTTTATCAAAGATTAAATATCATTAATGATGTTGCTTCTGCATTACATTATCTTCATCATGAATGTGAGCAACCGATCCTTCATTGTGATTTAAAGCCAAGCAATGTCCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAACCATTGATGGTACCTCTCATAAGCAAACTAGTACAATTGGAATAAAGGGGACTATTGGCTATACTCCTCCAGAATATGGAGCTGGTTCTGGGGTGTCTACTTATGGTGACATGTATAGCTTTGGGATTCTTATGTTGGAAATGCTTACCGGAAGAAGACCAACTGACAAAATGTTTGAAGATGATCAAAATCTTCATAACTTTGTTGAATTTTCCCTTCCTGATAATCTTTTGCAGATTTTGGACCCACAACTTGTTCCAAGTGATGAAGAAGATGAATTGGAAGAAGAAAACAATGGGAATCTTAGTCCAAAAGTTGAGAAGTGCTTAGTTTCACTTTTTAGGATTGGACTTGCTTGTTCTATGGAATCACCAAAAGAAAGAATGAGTATGGCTGATGTAACTAGGGAGCTCAACCTAATCAGAAAGGCATTTCTTGGTGGAGTTGACACTAGAGAGGAAATAAAGGTGAAATCAAATGACATGGTCATTTTGGAAACAGATGTGTATGCAGTATGA 3147 0.3788 MKPFSLILPAFWSICLHILVLLFILSSLSFGPNATASSALGNDTDHLALLKLKESISNDPFGVLVSWNASIHLCEWHGVTCMHQRVTELNLQGYQLHGSLSPHVGNLSFLTNLNLKNNSFYGKIPQELGRLLQLQQLSLTNNSFTGEIPTNLTSCSHLRDLYLEGNNLIGKIPIEIGSLWKLQSLAVGKNNLTGGFPPFLGNLSSLIRVSVSYNNLEGDIQQQICRLKNLAMIVVEVNKLSGTFPFCLYNMSSLIVISAAGNYFDGTLPPNMFNTLPNLQFFAIGRNQFSGPIPTSVSNVSTLTLLDIVVNHFVGNVPSLGRLQDLQWLNLGRNNLGDNSMKDLEFLKSLTNCSKLQMLDISYNNFGGSLPNSMGNLSTQLNRLYVGGNHLSGKIPAELGNLINLTLLTMESNHFEGLIPTTFWMLQKIQVLDLGGNQLSGVIPTFIGNLSQLFYLDLSQNMLEGNIPPNIGNCHKLQYLCLSQNRLRGTIPSEVFSLFSLTNLLDLSQNSLNGSIPKELGMLKNIDELDVSENHLSGDIPRTIGECISLEFLHLQGNSFHGIIPSSLASLKGLQYLDLSRNLLSGPIPDVLQNISTLKHLNVSFNMLDGEVPTKGVFGNASELAVTGNNKLCGGILQLHLPPCPVKDRKHSVHHNSKLIAVIICVVAFFFILSFVLAFFWIRKTNKKTSFDSPPTIDQLPKVSYQNLHHGTDGFSARNLIGLGSFGSVYKGTLESEDKIVAVKVLNLQKKGAHKSFIAECNALKSIRHRNLVKILTCCSSTDYKGQEFKALVFDYMKNGSLEQWLHPGKVDFEHPRTLDLYQRLNIINDVASALHYLHHECEQPILHCDLKPSNVLLDDDMVAHVSDFGIARLVSTIDGTSHKQTSTIGIKGTIGYTPPEYGAGSGVSTYGDMYSFGILMLEMLTGRRPTDKMFEDDQNLHNFVEFSLPDNLLQILDPQLVPSDEEDELEEENNGNLSPKVEKCLVSLFRIGLACSMESPKERMSMADVTRELNLIRKAFLGGVDTREEIKVKSNDMVILETDVYAV 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00156 1048 ProSitePatterns Protein kinases ATP-binding region signature. 721 744 IPR017441 GO:0005524
Sebi50g00156 1048 Gene3D Transferase(Phosphotransferase) domain 1 797 1033 - -
Sebi50g00156 1048 Gene3D Ribonuclease Inhibitor 155 268 IPR032675 -
Sebi50g00156 1048 Pfam Leucine rich repeat 404 463 IPR001611 GO:0005515
Sebi50g00156 1048 Pfam Leucine rich repeat 549 608 IPR001611 GO:0005515
Sebi50g00156 1048 SMART LRR_typ_2 523 547 IPR003591 -
Sebi50g00156 1048 SMART LRR_typ_2 131 155 IPR003591 -
Sebi50g00156 1048 SMART LRR_typ_2 475 498 IPR003591 -
Sebi50g00156 1048 SMART LRR_typ_2 402 425 IPR003591 -
Sebi50g00156 1048 SMART LRR_typ_2 450 474 IPR003591 -
Sebi50g00156 1048 SMART LRR_typ_2 571 594 IPR003591 -
Sebi50g00156 1048 SMART LRR_typ_2 323 348 IPR003591 -
Sebi50g00156 1048 SMART LRR_typ_2 426 449 IPR003591 -
Sebi50g00156 1048 Pfam Leucine rich repeat N-terminal domain 43 81 IPR013210 -
Sebi50g00156 1048 FunFam LRR receptor-like serine/threonine-protein kinase EFR 686 796 - -
Sebi50g00156 1048 Pfam Protein kinase domain 718 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00156 1048 CDD STKc_IRAK 721 1017 - -
Sebi50g00156 1048 Gene3D Phosphorylase Kinase; domain 1 696 796 - -
Sebi50g00156 1048 ProSiteProfiles Protein kinase domain profile. 715 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00156 1048 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 348 1015 - -
Sebi50g00156 1048 SUPERFAMILY L domain-like 44 336 - -
Sebi50g00156 1048 Gene3D Ribonuclease Inhibitor 353 644 IPR032675 -
Sebi50g00156 1048 Gene3D Ribonuclease Inhibitor 269 352 IPR032675 -
Sebi50g00156 1048 Gene3D Ribonuclease Inhibitor 44 154 IPR032675 -
Sebi50g00156 1048 FunFam LRR receptor-like serine/threonine-protein kinase EFR 345 650 - -
Sebi50g00156 1048 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 79 344 - -
Sebi50g00156 1048 SUPERFAMILY L domain-like 379 634 - -
Sebi50g00156 1048 SMART serkin_6 715 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00156 1048 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672|GO:0006468
Sebi50g00156 1048 SUPERFAMILY Protein kinase-like (PK-like) 689 1014 IPR011009 -
Sebi50g00156 1048 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 797 1026 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00156 Sebi-Chr50 2412178 2415743 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00156 42 1027 Receptor kinase-like Gene Family AT3G47570 46.493 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi50g00156 Pkinase 5.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00156 - - gmx:100785561 1387.09